BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0438500 Os04g0438500|AK068396
         (341 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21370.1  | chr1:7484250-7485451 FORWARD LENGTH=343            428   e-120

>AT1G21370.1 | chr1:7484250-7485451 FORWARD LENGTH=343
          Length = 342

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/339 (63%), Positives = 255/339 (75%), Gaps = 9/339 (2%)

Query: 8   PGGSPKSFR-YPRA-DFDLESGIARKGLRKPKNHDAPGLLTSTLMKIRYFYEAHPVAV-A 64
           P GS K+F  Y R+ DFDLESG   +  RKPK   +  ++ S   ++ + ++ HPV V  
Sbjct: 5   PIGSSKAFHAYSRSGDFDLESGGTIRKSRKPKTSFSK-MIKSLGNRLHHMFKLHPVLVFV 63

Query: 65  XXXXXXXXXXXXXXXXYETRF----RMMRGSSGEVGEYPLPELRNLVMVAGHSIYTSESC 120
                           Y  R        + +  +   YP   L+NLVMVAGHS+YTS  C
Sbjct: 64  VCVSFGITVLILVSSIYGNRLGSTVSYYKKNDLDSDGYPFANLKNLVMVAGHSVYTSSDC 123

Query: 121 GKIDREDSWFLEPYQKHPGQAATFLAHIKEGVGIAARDEKALLLFSGGETRKDAGPRSEA 180
           GK+++EDSWFLE YQK+PGQAATFL+HI+EGV  AA+D+++LLLFSGGETRKDAGPRSEA
Sbjct: 124 GKVEKEDSWFLESYQKNPGQAATFLSHIQEGVEAAAKDDESLLLFSGGETRKDAGPRSEA 183

Query: 181 QSYWTIADSKGWFGNDESVRRRALTEEHARDSFENLLFSVCRFRELTGSYPQNITVVSYD 240
           QSYW +A+SKGWFG +E VR RALTEEHARDSFENLLFSVCRFRELTGSYPQNITVVSYD
Sbjct: 184 QSYWAVAESKGWFGKNE-VRSRALTEEHARDSFENLLFSVCRFRELTGSYPQNITVVSYD 242

Query: 241 FKEERFAQLHRSALGFPEGRFFFLGTPATLTARESAVKGEAAVRSQFQEDPYGCLGSLHM 300
           FKEERFA LHRSA+GFPE RFF+LGTPA+L+++E A+KGEA VRSQFQEDPYGC+GSL  
Sbjct: 243 FKEERFAHLHRSAMGFPESRFFYLGTPASLSSKEGALKGEALVRSQFQEDPYGCVGSLWR 302

Query: 301 KRLKRDPFHRAIPYPNGCPELKGLFSYCGLVPYPGQLPW 339
           K+L RDPFHR IPYP GCPE+ GLF YCG  P+PG LPW
Sbjct: 303 KKLNRDPFHRTIPYPIGCPEIGGLFRYCGSAPFPGSLPW 341



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,638,999
Number of extensions: 314468
Number of successful extensions: 627
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 242
Effective length of database: 8,392,385
Effective search space: 2030957170
Effective search space used: 2030957170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)