BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0436100 Os04g0436100|AK072631
         (153 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04290.1  | chr1:1147721-1148352 REVERSE LENGTH=156            132   8e-32
AT2G29590.1  | chr2:12654602-12655432 REVERSE LENGTH=159           74   2e-14
AT3G61200.1  | chr3:22657599-22658350 REVERSE LENGTH=189           57   3e-09
AT3G16175.1  | chr3:5480497-5481208 FORWARD LENGTH=158             53   8e-08

>AT1G04290.1 | chr1:1147721-1148352 REVERSE LENGTH=156
          Length = 155

 Score =  132 bits (331), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 4/156 (2%)

Query: 1   MDPEAVRRSLEPTALSKEVVGPASASLRY---DAFALTGVRIDAAEHGRLLCSFVVTPRI 57
           MD E+V++ LE     ++   P  A L +   + F   G+++D  E GR++CS  + P +
Sbjct: 1   MDLESVKKYLEGDE-DEKAKEPMVAKLPHRFLERFVTNGLKVDLIEPGRIVCSMKIPPHL 59

Query: 58  ASPAGYLLSGVTATLADQLGSGVFLSSGIGTSGVSLELNLSYVDVASIGEEIEVEGKLLR 117
            +   +L  G TATL D +GS V  ++G   SGVS+E+N+SY+D A + EEIE+E K LR
Sbjct: 60  LNAGKFLHGGATATLVDLIGSAVIYTAGASHSGVSVEINVSYLDAAFLDEEIEIESKALR 119

Query: 118 AGKSVGVVSVDFRKKKTGKLIAQARHTKYLAVSSKL 153
            GK+V VVSV+ RKK TGK+IAQ RHTKY A  S L
Sbjct: 120 VGKAVAVVSVELRKKTTGKIIAQGRHTKYFAPRSNL 155



>AT2G29590.1 | chr2:12654602-12655432 REVERSE LENGTH=159
          Length = 158

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 5/127 (3%)

Query: 29  YDAFALTGVRIDAAEHGRLLCSFVVTPRIASPAGYLLSGVTATLADQLGSGVFLSSGIGT 88
           Y+ F+L G+R++  E G + CSF V  R+      L +G  A L D++G  +    G+  
Sbjct: 35  YENFSLRGIRVNRVEPGFISCSFKVPLRLTDRDKNLANGAIANLVDEVGGALVHGEGLPM 94

Query: 89  SGVSLELNLSYVDVASIGEEIEVEGKLL--RAGKSVGVVSVDFRKKKTGKLIAQARHTKY 146
           S VS++++++++  A +GEE+E+  +LL  R G    +V V  R K TG++IA+ RH+ +
Sbjct: 95  S-VSVDMSIAFLSKAKLGEELEITSRLLGERGGYKGTIVVV--RNKMTGEIIAEGRHSMF 151

Query: 147 LAVSSKL 153
              +SKL
Sbjct: 152 GRQASKL 158



>AT3G61200.1 | chr3:22657599-22658350 REVERSE LENGTH=189
          Length = 188

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 29  YDAFAL---TGVRIDAAEHGRLLCSFVVTPRIASPAGYLLSGVTATLADQLGSGVFLSSG 85
           +D+F++      R  +   GR+ CS  VTP I++    L  G  A++A+++      +  
Sbjct: 60  FDSFSVLFQNNTRALSIARGRVSCSVTVTPGISNFFKGLHGGAVASIAERVAMACVKTVV 119

Query: 86  IGTSGVSL-ELNLSYVDVASIGEEIEVEGKLLRAGKSVGVVSVDFRKKKTGKLIAQARHT 144
                + + EL++SY+  A I  E+ VEG ++R G+++ VV+V+F+ K+T K+   +R T
Sbjct: 120 SEDKHLFIGELSMSYLSSAPISSELLVEGTVVRTGRNLSVVTVEFKIKETMKVTYLSRAT 179

Query: 145 KYLAVSSKL 153
            Y +  SKL
Sbjct: 180 FYHSPISKL 188



>AT3G16175.1 | chr3:5480497-5481208 FORWARD LENGTH=158
          Length = 157

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 1   MDPEAVRRSLEPTALSKEVVGPASASLRYDAFALTGVRIDAAEHGRLLCSFVVTPRIASP 60
           +DP     ++  T    E +   +    ++   L G+ +     G L C  +VT  +   
Sbjct: 2   VDP-----TIHNTTTYLEEIAKGNGQTEFEILILKGLELIHVGKGILRCKLLVTDHVVGE 56

Query: 61  AGYLLSGVTATLADQLGSGVFLSSGIGTSGVSLELNLSYVDVASIGEEIEVEGKLLRAGK 120
            G   +GV   + D +G+    SSG G   +S++LN S+   A I E +E+E ++  +  
Sbjct: 57  DGSWNAGVITAVMDSIGASAVYSSGGGLH-ISVDLNSSFYSTAKIHETVEIEARVNGSNG 115

Query: 121 SVGVVSVDFRKKKTGKLIAQAR 142
            +    ++ R++ +G++IA  R
Sbjct: 116 GLKSAVIEIRRETSGEIIATGR 137



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,889,642
Number of extensions: 105974
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 4
Length of query: 153
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 63
Effective length of database: 8,639,129
Effective search space: 544265127
Effective search space used: 544265127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)