BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0423100 Os04g0423100|Os04g0423100
(292 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35660.1 | chr2:14988499-14990320 FORWARD LENGTH=440 126 2e-29
AT4G38540.1 | chr4:18023187-18024827 FORWARD LENGTH=408 120 9e-28
AT2G29720.1 | chr2:12700592-12702289 REVERSE LENGTH=428 119 1e-27
AT5G05320.1 | chr5:1575093-1576679 REVERSE LENGTH=407 117 7e-27
AT4G15760.1 | chr4:8972785-8974548 REVERSE LENGTH=423 84 8e-17
AT4G15765.1 | chr4:8975783-8977211 REVERSE LENGTH=272 62 2e-10
>AT2G35660.1 | chr2:14988499-14990320 FORWARD LENGTH=440
Length = 439
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 100/207 (48%), Gaps = 10/207 (4%)
Query: 59 LRATGAALTVFPNGWFALRALGIAHKLTPRYQPYETSVVTNLESGATQVFRFGGHKSRSG 118
LR G +LT+F NGW L A+ + +L ++ E VV + + F+F K
Sbjct: 79 LRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGRELRSFKF---KDDDQ 135
Query: 119 EVRVRPVHRRXXXXXXXXXXPPGTIRFSSRLASIGTEPXXXXXXXXXXXXXXXDDGTVIR 178
VR V RR PP TIRFSS+L SI + DGT +
Sbjct: 136 SQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSN-------ANGDTLLQLGDGTRLL 188
Query: 179 SRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLRAGMV 238
+++++GCDG+ S VA W+G +EP G RGL YP G +K++ G+RAG V
Sbjct: 189 AQIVIGCDGIRSKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGIRAGYV 248
Query: 239 PISDTDIYWFVVNNTVPAGKPAQMPRI 265
P+S T +YWF+ N+ G P I
Sbjct: 249 PVSTTKVYWFICFNSPSLGPKITDPAI 275
>AT4G38540.1 | chr4:18023187-18024827 FORWARD LENGTH=408
Length = 407
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 59 LRATGAALTVFPNGWFALRALGIAHKLTPRYQPYETSVVTNLESGA--TQVFRFGGHKSR 116
LRATG A T + N W A+ ALG++ + + E VV + +G T++
Sbjct: 41 LRATGFAFTTWFNAWKAMEALGVSQHIRSLHDRLEGWVVGTISAGTPPTEMLF-----PE 95
Query: 117 SGEVRVRPVHRRXXXXXXXXXXPPGTIRFSSRLASIGTEPXXXXXXXXXXXXXXXDDGTV 176
S E R V R+ P TIRFSS++ I DGT+
Sbjct: 96 SEEYESRCVQRKLLLEALAGELPEETIRFSSKVVHI--------ELSGCYKKVHLSDGTI 147
Query: 177 IRSRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLRAG 236
++++VLVGCDGV+S V +WLG PA++ R +RGL +P GHG K QF G+R+G
Sbjct: 148 LKTKVLVGCDGVYSVVGKWLGFKNPATTARLAIRGLTHFPEGHGFGKRFFQFYGDGVRSG 207
Query: 237 MVPISDTDIYWFVVNNTVPAGKPAQMPRIK 266
+P +YWF+ + + + +K
Sbjct: 208 FIPCDHNTVYWFLTHTSTDIDEETNSEILK 237
>AT2G29720.1 | chr2:12700592-12702289 REVERSE LENGTH=428
Length = 427
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 98/207 (47%), Gaps = 10/207 (4%)
Query: 59 LRATGAALTVFPNGWFALRALGIAHKLTPRYQPYETSVVTNLESGATQVFRFGGHKSRSG 118
LR GA+LT+ NGW L A+ I +L ++ + V+ + + F+F K
Sbjct: 77 LRTGGASLTLSKNGWRVLDAISIGPQLRKQFLEMQGVVLKKEDGRELRSFKF---KDNDQ 133
Query: 119 EVRVRPVHRRXXXXXXXXXXPPGTIRFSSRLASIGTEPXXXXXXXXXXXXXXXDDGTVIR 178
VR V RR PP TIRFSS+L SI + DGT
Sbjct: 134 SQEVRGVERRVLLETLASQLPPQTIRFSSKLESIQSN-------ANGDTLLQLKDGTRFL 186
Query: 179 SRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLRAGMV 238
+ +++GCDG+ S VA W+G +EP G RGL +P G ++++ GLRAG V
Sbjct: 187 ANIVIGCDGIRSKVATWMGFSEPKYVGYCAFRGLGFFPNGQPFQQKVNYIFGRGLRAGYV 246
Query: 239 PISDTDIYWFVVNNTVPAGKPAQMPRI 265
P+S T +YWF+ N+ G P I
Sbjct: 247 PVSATKVYWFITFNSPSLGPQMMDPAI 273
>AT5G05320.1 | chr5:1575093-1576679 REVERSE LENGTH=407
Length = 406
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 28/240 (11%)
Query: 58 ELRATGAALTVFPNGWFALRALGIAH---KLTPRYQPYETSVVTNLESGATQVFRFGGHK 114
+LRATG AL+++ N W A+ ALGI+ L R+Q + ++ + +F
Sbjct: 40 QLRATGFALSLYFNAWKAMEALGISQHIRSLGDRFQGWVVRPISAGDPPKEMLF------ 93
Query: 115 SRSGEVRVRPVHRRXXXXXXXXXXPPGTIRFSSRLASIGTEPXXXXXXXXXXXXXXXDDG 174
S E VR V R+ P GTIRFSS+L I DG
Sbjct: 94 PESEEYEVRCVQRKLLLDALAGELPQGTIRFSSKLVHI--------ELSGHYKMVHLSDG 145
Query: 175 TVIRSRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLR 234
T+++++VLVGCDGV S V +WLG P + R +RG+A + GH + + QF +G+R
Sbjct: 146 TILKTKVLVGCDGVKSVVGKWLGFKNPVKTSRVAIRGIAHFQTGHELGRRFFQFYGNGVR 205
Query: 235 AGMVPISDTDIYWFVVNNTVPAGKPAQ-------MPRIKICSNLMISLLQMC----LIMN 283
+G + +YWF+ + + K + +IK + + S+L+ L+MN
Sbjct: 206 SGFISCDQNTVYWFLTHTSTDLDKKNHQKIKQFVLTKIKDLPDNIKSILETTDLDSLVMN 265
>AT4G15760.1 | chr4:8972785-8974548 REVERSE LENGTH=423
Length = 422
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 58 ELRATGAALTVFPNGWFALRALGIAHKLTPRYQPYETSVVTNLESGATQVFRFGGHKSRS 117
++R+ GA + NGW AL LG+ +L + +E+G + F +
Sbjct: 62 KVRSEGAGIGTLSNGWRALDQLGVGDRLRLNSSLIHKARTMLIENGKKREF------VSN 115
Query: 118 GEVRVRPVHRRXXXXXXXXXXPPGTIRFSSRLASIGTEPXXXXXXXXXXXXXXXDDGTVI 177
R + R P GTIRF S + SI + +G I
Sbjct: 116 IVDEARCIKRNDLVEALSDALPKGTIRFGSHIVSIEQDKTTLFPVVHLA------NGNSI 169
Query: 178 RSRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLRAGM 237
+++VL+GCDG +S V+ +L + + VRG YP GHG +E+ + + G
Sbjct: 170 KAKVLIGCDGANSIVSDYLQLNPKKAFACRAVRGFTKYPNGHGFPQEVLRIKQGNVLIGR 229
Query: 238 VPISDTDIYWFVVN 251
+P++D ++WF+V+
Sbjct: 230 LPLTDNQVFWFLVH 243
>AT4G15765.1 | chr4:8975783-8977211 REVERSE LENGTH=272
Length = 271
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 181 VLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLRAGMVPI 240
VL+GCDG +S V+R+LG+ G +RG YP HG R+E + + +G +PI
Sbjct: 113 VLIGCDGSNSVVSRFLGLNPTKDLGSRAIRGFTNYPDDHGFRQEFIRIKMDNVVSGRLPI 172
Query: 241 SDTDIYWFVVNNTVP 255
+ ++WFVV P
Sbjct: 173 THKLVFWFVVLRNCP 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,885,356
Number of extensions: 171367
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 6
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)