BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0412800 Os04g0412800|AK060508
(448 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03870.1 | chr5:1035813-1036967 REVERSE LENGTH=385 181 5e-46
AT4G10630.1 | chr4:6566625-6567629 REVERSE LENGTH=335 126 2e-29
AT5G06470.1 | chr5:1974659-1975378 REVERSE LENGTH=240 123 2e-28
AT1G64500.1 | chr1:23953270-23954376 FORWARD LENGTH=369 121 7e-28
AT1G32760.1 | chr1:11858251-11859195 FORWARD LENGTH=315 117 2e-26
AT5G01420.1 | chr5:174886-176091 REVERSE LENGTH=402 117 2e-26
AT5G13810.1 | chr5:4455769-4456593 FORWARD LENGTH=275 114 1e-25
AT3G57070.1 | chr3:21124174-21125427 FORWARD LENGTH=418 110 2e-24
AT5G58530.1 | chr5:23660428-23661249 FORWARD LENGTH=274 99 4e-21
AT2G41330.1 | chr2:17227067-17228275 FORWARD LENGTH=403 93 3e-19
AT5G39865.1 | chr5:15965560-15966732 REVERSE LENGTH=391 88 8e-18
AT3G28850.1 | chr3:10848669-10849955 FORWARD LENGTH=429 88 1e-17
AT3G11773.2 | chr3:3722989-3723659 REVERSE LENGTH=201 65 1e-10
>AT5G03870.1 | chr5:1035813-1036967 REVERSE LENGTH=385
Length = 384
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 153/462 (33%), Positives = 206/462 (44%), Gaps = 92/462 (19%)
Query: 1 MGCISSKLLPPGPGDARGGSGARATVRGRVDHVVSLTSTTYGVLDLHPKHGXXXXXXXXX 60
MGC+SSKL G + R G DH+VSLTSTTYG LDL +
Sbjct: 1 MGCVSSKL-----GKKKLIREIRVNNGG--DHIVSLTSTTYGHLDLDER----------- 42
Query: 61 XXXXXXXCQEKVQETQAQPPQEDKPISREWKRARPPPLVVPSAKKPAPAGKLDSGLEVIN 120
E P S E + V S P + K D E+IN
Sbjct: 43 --------------------AETSPKSLEVTKGE----VFESEIIPRRSIKRDDP-EIIN 77
Query: 121 AWEIMAGLEXXXXXXXXXXXXXXXXXXRWSPARVIAMALPSPKKSATKRRNTPGKE-NSP 179
WE+M LE +M + +P+K + K R GK +P
Sbjct: 78 TWELMEDLED-------------------------SMHVSNPQKISPKSRGIFGKSWKTP 112
Query: 180 LQ-------RCSGNNNSSNINKTGDVNVDRVLRPYNSIDNSKLSRMSKRFSPVSARIVRK 232
++ R S N + V+ +++L+P N ++ K M F P+ +
Sbjct: 113 VKSVVESPKRGSSKRFGGKENNSRGVSPNQILKPKNILETPKRGVMRLSF-PLKSE---- 167
Query: 233 PGPPETGGGMXXXXXXXXXXFDPELLASIERELSEEGAHIKRMVGSEXXXXXXXXXXXMV 292
E+ + FDP+L+AS ERELS+E IK ++ +
Sbjct: 168 ----ESSVTVTQRRKSYSPMFDPDLVASYERELSQEKEQIKMVISPVVHESRKTEKTERI 223
Query: 293 AEG---KCPPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXX 349
E KCPPGG +VV+Y TTLRGIR+TFE+CN VR+ +++H+V+ ERDVSM S +
Sbjct: 224 LEKFPEKCPPGGEHSVVIYITTLRGIRKTFEDCNVVRSILDSHEVRFSERDVSMHSVFKE 283
Query: 350 XXXXXXXXXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARV---WCAGCAG 406
PAVFV+GR VG EV P AR+ C GC G
Sbjct: 284 EIRGIMGTKHVKIPAVFVKGRMVGSVEEVMRLEEEGKLGILLEGIPAARLGGSCCRGCGG 343
Query: 407 VRFVMCRDCNGSRKVRVDGERKETVQCGECNENGLVRCPICS 448
+RF+MC CNGS KVR + E+K V+C +CNENGLV CPICS
Sbjct: 344 MRFMMCVVCNGSCKVR-EEEKKSMVKCLKCNENGLVLCPICS 384
>AT4G10630.1 | chr4:6566625-6567629 REVERSE LENGTH=335
Length = 334
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 90/165 (54%), Gaps = 13/165 (7%)
Query: 297 CPPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXX 356
CPPGG + VV+YTT+LRG+R+TFE CNAVRAA+E+ V + ERDVSMD +
Sbjct: 170 CPPGGENRVVMYTTSLRGVRQTFEACNAVRAAVESFGVVVCERDVSMDRRFREELVSLMA 229
Query: 357 X------XXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARVW------CAGC 404
P VFV+GR++GG EV PR + C GC
Sbjct: 230 KRVGDEGVAALPPRVFVKGRYIGGGEEVLRLVEEGSFGELISGIPRKKAGGCESGACDGC 289
Query: 405 AGVRFVMCRDCNGSRK-VRVDGERKETVQCGECNENGLVRCPICS 448
G+ F+ C CNGS K V+ G V+C ECNENGLV CPICS
Sbjct: 290 GGLFFLPCFRCNGSCKMVKGWGSASVVVRCNECNENGLVPCPICS 334
>AT5G06470.1 | chr5:1974659-1975378 REVERSE LENGTH=240
Length = 239
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
Query: 297 CPPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXX 356
CPPGG D+VV YTT LR +R+TFE C VR +E H V ERDVSMDS +
Sbjct: 83 CPPGGEDSVVFYTTGLRSVRKTFEACRRVRFLLENHQVMYRERDVSMDSEF-REEMWRLL 141
Query: 357 XXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARVWCAGCAGVRFVMCRDCN 416
P +F+RGR++GGA EV + C C RF++C CN
Sbjct: 142 GGKVTSPRLFIRGRYIGGAEEVVALNENGKLKKLLQGISQVDSPCESCENERFLICSSCN 201
Query: 417 GSRKVRVDGERKET------VQCGECNENGLVRCPICS 448
GS ++ + +E+ +C ECNENGLV+CP+C+
Sbjct: 202 GSTRLLAEHHDEESSNDNMWTRCRECNENGLVKCPLCT 239
>AT1G64500.1 | chr1:23953270-23954376 FORWARD LENGTH=369
Length = 368
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 13/163 (7%)
Query: 296 KCPPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXX 355
KCPPGG + +++YTT+L+G+RRT+E+C VRA +E V + ERDVS+D+G
Sbjct: 205 KCPPGGGEGLIVYTTSLQGVRRTYEDCMRVRAIMEQQGVVVDERDVSLDAGVLSELKELL 264
Query: 356 XXXXXXXPA-VFVRGRHVGGAAEVTXXXXXXXX------XXXXXXXPRARVWCAGCAGVR 408
P VFV+GR++GGAAEVT R+ C GC G R
Sbjct: 265 QDEASVAPPRVFVKGRYLGGAAEVTAMNENGKLGRVLRWARVERVGEEGRLTCEGCGGAR 324
Query: 409 FVMCRDCNGSRKV----RVDGERKETVQCGECNENGLVRCPIC 447
++ C +C GS KV GER E +C +CNENGL+RCP+C
Sbjct: 325 WLPCFECGGSCKVAAVGAAKGERWE--RCVKCNENGLIRCPVC 365
>AT1G32760.1 | chr1:11858251-11859195 FORWARD LENGTH=315
Length = 314
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 92/158 (58%), Gaps = 10/158 (6%)
Query: 300 GGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXX 359
GG + VV+YTT+LRG+RRTFE CNAVRAAIE+ V + ERDVSMD G+
Sbjct: 158 GGENRVVIYTTSLRGVRRTFEACNAVRAAIESFGVVVCERDVSMDRGFREELSNLMAVES 217
Query: 360 XXX---PAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRAR----VWCAGCAGVRFVMC 412
P VFV+G+++GGA EV PR + C GC G+ F+ C
Sbjct: 218 TAAVLPPRVFVKGKYIGGAEEVMRLVEEGLLGELLKEIPRKKDRCGGGCGGCGGLAFLPC 277
Query: 413 RDCNGSRKVRVDGERKE--TVQCGECNENGLVRCPICS 448
CNGS KV V+G + V+C ECNENGLVRCPICS
Sbjct: 278 SGCNGSCKV-VEGWGNDAVVVKCKECNENGLVRCPICS 314
>AT5G01420.1 | chr5:174886-176091 REVERSE LENGTH=402
Length = 401
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 84/158 (53%), Gaps = 6/158 (3%)
Query: 294 EGKCPPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXX 353
E +CPPGG ++VV YTTTLRGIR+TF++CN +R +++ VK ERDVSM Y
Sbjct: 247 EERCPPGGEESVVFYTTTLRGIRKTFDDCNMIRFLLDSFKVKYYERDVSMHREYREELRR 306
Query: 354 XXXXXXXXXPAV-FVRGRHVGGAAEVTXXXXXXXXXXXXXXXP-RARVWCAGCAGVRFVM 411
P V FV+GR +GGA V P C C G RF+M
Sbjct: 307 ISAAETEVLPPVLFVKGRCIGGAQRVLGLHEQGKFKILFEGIPITGDERCRRCDGFRFLM 366
Query: 412 CRDCNGSRKVRV-DGERKETVQCGECNENGLVRCPICS 448
C C GSR++ DG R +QC CNENGL+ C CS
Sbjct: 367 CDGCRGSRRIISGDGSR---IQCLICNENGLIVCVGCS 401
>AT5G13810.1 | chr5:4455769-4456593 FORWARD LENGTH=275
Length = 274
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 299 PGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXX 358
PG D +V+Y T+LRGIRRT+E+C AVR V + ERDVSMD Y
Sbjct: 123 PGTEDRIVVYFTSLRGIRRTYEDCYAVRMIFRGFRVWIDERDVSMDIAYRKELQIAMGEK 182
Query: 359 XXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRAR--VWCAGCAGVRFVMCRDCN 416
P VF+ G++VGGA + P + C C +RFV C +C+
Sbjct: 183 SVSLPQVFIMGKYVGGADVIKSLFEIGELAKILKEFPMRQPGFVCHCCGDIRFVPCSNCS 242
Query: 417 GSRKVRVDGERKETVQCGECNENGLVRCPICS 448
GS+K+ D + +C ECNENGL+RCP CS
Sbjct: 243 GSKKL-FDEDEDRVKRCPECNENGLIRCPDCS 273
>AT3G57070.1 | chr3:21124174-21125427 FORWARD LENGTH=418
Length = 417
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 299 PGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXX--XX 356
PG D +VLY TTLRGIR+T+E+C VRA + V + ERD+SMDS Y
Sbjct: 264 PGTEDKIVLYFTTLRGIRKTYEDCCCVRAILRGVQVSVDERDISMDSKYRKELQSVLGAA 323
Query: 357 XXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARVW--CAGCAGVRFVMCRD 414
P VF+RG H+GG E+ P C C RFV C +
Sbjct: 324 EKPVCLPQVFIRGTHIGGVEEIMQLNDGGELAEMLKDFPACERLGTCRSCGDARFVPCTN 383
Query: 415 CNGSRKVRVDGERKETVQCGECNENGLVRCPIC 447
C+GS KV + + + +C +CNENGLVRC +C
Sbjct: 384 CDGSTKV-FEEQDERFKRCPKCNENGLVRCRVC 415
>AT5G58530.1 | chr5:23660428-23661249 FORWARD LENGTH=274
Length = 273
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 299 PGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXX--------- 349
PG ++V+Y T+LR +R TFE C +V + + + V++ ERD+SMD+ +
Sbjct: 109 PGAEKSIVVYFTSLRVVRPTFEACKSVTSILHSFPVRIDERDLSMDASFSTELQRIFGKD 168
Query: 350 XXXXXXXXXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARV-WCAGCAGVR 408
P VF+ GR++GGA EV P+ C C G R
Sbjct: 169 QNQNQNQAKTPKLPRVFIGGRYIGGAEEVKQLHEIGELKKLVQELPKIEPGVCEMCGGHR 228
Query: 409 FVMCRDCNGSRKVRVDGERKETVQCGECNENGLVRCPICS 448
FV C+DC+GS KV E+ C CNENGLVRC CS
Sbjct: 229 FVPCKDCHGSHKVHT--EKLGFRTCLTCNENGLVRCSSCS 266
>AT2G41330.1 | chr2:17227067-17228275 FORWARD LENGTH=403
Length = 402
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 303 DAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXX-XX 361
+ +V+Y T+LRGIR+T+E+C VRA + V + ERD+SMDS Y
Sbjct: 254 NKIVVYFTSLRGIRKTYEDCCCVRAILRGFQVAVEERDISMDSKYRKELQNALGEEKPVC 313
Query: 362 XPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARVW--CAGCAGVRFVMCRDCNGSR 419
P VF+RG +GG E+ P C C RFV C +C GS
Sbjct: 314 LPQVFIRGVRIGGIEEIKILNDGGELAEMLKDFPACESIGACDSCGDARFVPCTNCGGST 373
Query: 420 KV---RVDGERKETVQCGECNENGLVRCPIC 447
KV + DG ++ C CNENGLVRC C
Sbjct: 374 KVFEEQEDGFKR----CNGCNENGLVRCNKC 400
>AT5G39865.1 | chr5:15965560-15966732 REVERSE LENGTH=391
Length = 390
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 301 GADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXXX 360
G + VVLY T+LRGIR+T+E+C +R +++ +++ ERDVSM SG+
Sbjct: 223 GKERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFN 282
Query: 361 -----XXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXX-------XPRARVWCAGCAGVR 408
P VF+ +++GG E+ P C C VR
Sbjct: 283 NGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVR 342
Query: 409 FVMCRDCNGSRKVRVDGERKE-------TVQCGECNENGLVRCPIC 447
FV C C+GS K+ +GE ++ +C CNENGL+RC +C
Sbjct: 343 FVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVC 388
>AT3G28850.1 | chr3:10848669-10849955 FORWARD LENGTH=429
Length = 428
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 301 GADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXXX 360
G + V+LY T+LRGIR+T+EE VR +++ +++ ERDVSM SG+
Sbjct: 249 GKERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFN 308
Query: 361 -----XXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRAR-------VWCAGCAGVR 408
P VF+ +++GGA E+ R + C C VR
Sbjct: 309 KGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVR 368
Query: 409 FVMCRDCNGSRKVR------------------VDGERKETVQ-CGECNENGLVRCPIC 447
FV C C+GS KV V ER+ Q C +CNENGL+RCP+C
Sbjct: 369 FVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVC 426
>AT3G11773.2 | chr3:3722989-3723659 REVERSE LENGTH=201
Length = 200
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 338 ERDVSMDSGYXXXXXXXXXXXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRA 397
ERDVSMD Y P +F++ +++GGA EV A
Sbjct: 92 ERDVSMDCEYKEEMWRLLGEQVTP-PRLFIKCKYIGGADEVVSLNENEKLKKLLEVFSSA 150
Query: 398 RV-WCAGCAGVRFVMCRDCNGSRKVRVDGERKETVQCGECNENGLVRCPICS 448
+ C C RF++C CNG + RV E + +C ECNENGLV+C +C+
Sbjct: 151 KSRQCEMCENERFLICSKCNG--RSRVVAEHETWKRCIECNENGLVKCALCT 200
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,548,683
Number of extensions: 314750
Number of successful extensions: 1124
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 13
Length of query: 448
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,310,137
Effective search space: 2875307402
Effective search space used: 2875307402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)