BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0412000 Os04g0412000|J100078M24
(82 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48410.1 | chr3:17925786-17928100 REVERSE LENGTH=386 110 1e-25
AT2G36290.1 | chr2:15208867-15210768 REVERSE LENGTH=365 105 3e-24
AT1G74280.1 | chr1:27929758-27931126 FORWARD LENGTH=373 102 3e-23
AT1G74300.1 | chr1:27935368-27936474 FORWARD LENGTH=347 100 2e-22
AT3G54240.1 | chr3:20080926-20082145 FORWARD LENGTH=351 94 1e-20
AT1G74290.1 | chr1:27931836-27934268 FORWARD LENGTH=372 93 3e-20
AT3G44510.2 | chr3:16108251-16111139 REVERSE LENGTH=326 91 1e-19
AT5G22460.1 | chr5:7443659-7445269 REVERSE LENGTH=341 89 6e-19
AT3G03240.1 | chr3:746781-748291 REVERSE LENGTH=334 87 1e-18
AT1G08310.2 | chr1:2619134-2620338 FORWARD LENGTH=319 86 5e-18
AT3G03230.1 | chr3:744478-746009 REVERSE LENGTH=334 85 6e-18
AT3G09690.1 | chr3:2972356-2974592 FORWARD LENGTH=528 50 2e-07
AT5G02970.1 | chr5:695391-697412 FORWARD LENGTH=515 50 3e-07
>AT3G48410.1 | chr3:17925786-17928100 REVERSE LENGTH=386
Length = 385
Score = 110 bits (276), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/74 (67%), Positives = 58/74 (78%)
Query: 9 LVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMG 68
L L +EL IY +SFDRPGY ESDPNL + +SIALDIEELAD L LGP+FYL G+SMG
Sbjct: 116 LSPALVEELRIYIVSFDRPGYGESDPNLNGSPRSIALDIEELADGLGLGPQFYLFGYSMG 175
Query: 69 GEIMWSCLKHISHR 82
GEI W+CL +I HR
Sbjct: 176 GEITWACLNYIPHR 189
>AT2G36290.1 | chr2:15208867-15210768 REVERSE LENGTH=365
Length = 364
Score = 105 bits (263), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/74 (62%), Positives = 59/74 (79%)
Query: 9 LVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMG 68
L ++ + LG+Y +SFDRPGYAESDP+ T KS+ALDIEELAD L LG KFY++G+SMG
Sbjct: 101 LSPDIKEGLGVYMVSFDRPGYAESDPDPNRTPKSLALDIEELADQLSLGSKFYVIGYSMG 160
Query: 69 GEIMWSCLKHISHR 82
G+ W+CLK+I HR
Sbjct: 161 GQATWACLKYIPHR 174
>AT1G74280.1 | chr1:27929758-27931126 FORWARD LENGTH=373
Length = 372
Score = 102 bits (255), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/74 (59%), Positives = 57/74 (77%)
Query: 9 LVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMG 68
L +L +ELG+Y +SFDRPGY ESDP+ + T +S+ DIEELAD L LG KFY++G+SMG
Sbjct: 105 LSPDLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDIEELADQLSLGSKFYVLGYSMG 164
Query: 69 GEIMWSCLKHISHR 82
G+ W CLK+I HR
Sbjct: 165 GQAAWGCLKYIPHR 178
>AT1G74300.1 | chr1:27935368-27936474 FORWARD LENGTH=347
Length = 346
Score = 100 bits (249), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/74 (60%), Positives = 55/74 (74%)
Query: 9 LVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMG 68
L +L QE G+Y +SFD+PGY ESDP+ T KS+ALDIEELAD L LG KFY++G SMG
Sbjct: 88 LSPDLVQERGVYMVSFDKPGYGESDPDPIRTPKSLALDIEELADQLSLGSKFYVIGKSMG 147
Query: 69 GEIMWSCLKHISHR 82
G+ W CLK+ HR
Sbjct: 148 GQAAWGCLKYTPHR 161
>AT3G54240.1 | chr3:20080926-20082145 FORWARD LENGTH=351
Length = 350
Score = 94.4 bits (233), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/65 (60%), Positives = 53/65 (81%)
Query: 18 GIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMGGEIMWSCLK 77
GIY +S+DRPGY ESDP+ + EK++A D+E+LAD LQLG KFY++G+SMGG+ +W LK
Sbjct: 98 GIYVVSYDRPGYGESDPHSSRNEKTLAHDVEQLADQLQLGSKFYVVGYSMGGQAVWGVLK 157
Query: 78 HISHR 82
+I HR
Sbjct: 158 YIPHR 162
>AT1G74290.1 | chr1:27931836-27934268 FORWARD LENGTH=372
Length = 371
Score = 92.8 bits (229), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/76 (56%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
Query: 9 LVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMG 68
L +L +ELG+Y +SFDRPGY ESDP+ + T +S+ DIEEL D L LG KFY++G SMG
Sbjct: 105 LSPDLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDIEELDDQLSLGSKFYVIGKSMG 164
Query: 69 GEIMWSC--LKHISHR 82
G+ W C LK+I HR
Sbjct: 165 GQAAWGCLNLKYIPHR 180
>AT3G44510.2 | chr3:16108251-16111139 REVERSE LENGTH=326
Length = 325
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 54/78 (69%)
Query: 5 LRLKLVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMG 64
+ + QEL E+GIY + +DR GY ESDPN + KS A D++ELAD L++G +FYL+G
Sbjct: 45 MNFNVSQELVNEIGIYFVLYDRAGYGESDPNPKRSLKSEAYDVQELADGLEIGSRFYLIG 104
Query: 65 FSMGGEIMWSCLKHISHR 82
SMG +WSCLKHI R
Sbjct: 105 ISMGSYTVWSCLKHIPQR 122
>AT5G22460.1 | chr5:7443659-7445269 REVERSE LENGTH=341
Length = 340
Score = 88.6 bits (218), Expect = 6e-19, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 56/72 (77%)
Query: 11 QELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMGGE 70
+++ +ELGIY + +DR GY ESDP+ + T KS A DI+ELAD L++GPKFY++G S+G
Sbjct: 84 KDVIEELGIYFVFYDRAGYGESDPHPSRTVKSEAYDIQELADKLKIGPKFYVLGISLGAY 143
Query: 71 IMWSCLKHISHR 82
++SCLK+I HR
Sbjct: 144 SVYSCLKYIPHR 155
>AT3G03240.1 | chr3:746781-748291 REVERSE LENGTH=334
Length = 333
Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%)
Query: 7 LKLVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFS 66
LK+ QE+ E IY L FDR GY ESDP+ + T K+ DIEELAD LQ+GPKF+++G S
Sbjct: 76 LKITQEMIDEFEIYFLLFDRAGYGESDPHPSRTLKTDTYDIEELADKLQIGPKFHVLGMS 135
Query: 67 MGGEIMWSCLKHISHR 82
+G ++ CLK+I HR
Sbjct: 136 LGAYPVYGCLKYIPHR 151
>AT1G08310.2 | chr1:2619134-2620338 FORWARD LENGTH=319
Length = 318
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 49/75 (65%)
Query: 8 KLVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSM 67
K QEL +EL +Y L +DR GY SD N + +S DI ELAD L+LGPKFYL+G SM
Sbjct: 53 KFFQELIEELEVYLLFYDRSGYGASDSNTKRSLESEVEDIAELADQLELGPKFYLIGISM 112
Query: 68 GGEIMWSCLKHISHR 82
G W CL+HI HR
Sbjct: 113 GSYPTWGCLRHIPHR 127
>AT3G03230.1 | chr3:744478-746009 REVERSE LENGTH=334
Length = 333
Score = 85.1 bits (209), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 52/76 (68%)
Query: 7 LKLVQELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFS 66
L + QE+ E IY L FDR GY ESDPN T K+ DIEELAD LQ+GPKF+++G S
Sbjct: 76 LYITQEMIDEFKIYFLFFDRAGYGESDPNPTRTLKTDTYDIEELADKLQVGPKFHVIGMS 135
Query: 67 MGGEIMWSCLKHISHR 82
+G ++ CLK+I +R
Sbjct: 136 LGAYPVYGCLKYIPNR 151
>AT3G09690.1 | chr3:2972356-2974592 FORWARD LENGTH=528
Length = 527
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 11 QELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMGGE 70
+ L ++ G+ +S+D PG+ ESDP+ A S A D+ +LA L + KF+L+G+S G
Sbjct: 209 ESLLKDYGVRLVSYDLPGFGESDPHRARNLSSSASDMIDLAAALGIVDKFWLLGYSSGSV 268
Query: 71 IMWSCLKHI 79
W+ +++
Sbjct: 269 HAWAAMRYF 277
>AT5G02970.1 | chr5:695391-697412 FORWARD LENGTH=515
Length = 514
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 11 QELAQELGIYQLSFDRPGYAESDPNLASTEKSIALDIEELADNLQLGPKFYLMGFSMGGE 70
+ L E G+ +S+D PG+ ESDP+ S A D+ LA + + KF+L+G+S G
Sbjct: 206 KSLLVEYGVRLVSYDLPGFGESDPHRGRNLSSSASDMINLAAAIGIDEKFWLLGYSTGSI 265
Query: 71 IMWSCLKHISHR 82
W+ +K+ +
Sbjct: 266 HTWAGMKYFPEK 277
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,849,331
Number of extensions: 59762
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 13
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)