BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0393500 Os04g0393500|Os04g0393500
(135 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G14070.1 | chr5:4541915-4542337 FORWARD LENGTH=141 111 1e-25
AT3G02000.1 | chr3:332512-332922 REVERSE LENGTH=137 110 2e-25
AT1G28480.1 | chr1:10013634-10014047 REVERSE LENGTH=138 87 2e-18
AT4G15700.1 | chr4:8937545-8937853 FORWARD LENGTH=103 87 3e-18
AT4G15670.1 | chr4:8929237-8929545 FORWARD LENGTH=103 85 9e-18
AT4G15680.1 | chr4:8931813-8932121 FORWARD LENGTH=103 85 1e-17
AT5G18600.1 | chr5:6183466-6183774 REVERSE LENGTH=103 85 1e-17
AT3G21460.1 | chr3:7557567-7557875 REVERSE LENGTH=103 85 1e-17
AT4G15690.1 | chr4:8934444-8934752 FORWARD LENGTH=103 84 2e-17
AT4G15660.1 | chr4:8925928-8926236 FORWARD LENGTH=103 84 2e-17
AT3G62950.1 | chr3:23266303-23266614 FORWARD LENGTH=104 83 4e-17
AT2G47870.1 | chr2:19603339-19603650 FORWARD LENGTH=104 80 2e-16
AT2G30540.1 | chr2:13011259-13011567 REVERSE LENGTH=103 76 4e-15
AT2G47880.1 | chr2:19605124-19605432 FORWARD LENGTH=103 74 3e-14
AT1G06830.1 | chr1:2097189-2097488 FORWARD LENGTH=100 72 1e-13
AT3G62960.1 | chr3:23268780-23269088 FORWARD LENGTH=103 70 2e-13
AT5G11930.1 | chr5:3845165-3845611 REVERSE LENGTH=149 64 2e-11
AT4G33040.1 | chr4:15940779-15941213 REVERSE LENGTH=145 63 4e-11
AT1G03020.1 | chr1:698207-698515 REVERSE LENGTH=103 60 3e-10
AT3G62930.1 | chr3:23261538-23261846 REVERSE LENGTH=103 59 8e-10
AT5G63030.1 | chr5:25286352-25287517 FORWARD LENGTH=126 50 3e-07
AT1G03850.1 | chr1:976428-977685 REVERSE LENGTH=160 48 2e-06
>AT5G14070.1 | chr5:4541915-4542337 FORWARD LENGTH=141
Length = 140
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXX---XXXXXXXXXXXPVVFIGG 105
CCMCHA+KRLF GMGV PAVHELDL P G ++ PVVFIGG
Sbjct: 51 CCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGALPVVFIGG 110
Query: 106 KLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
K+VGAM+RVMA+HINGSLVPLLK+AGALWL
Sbjct: 111 KMVGAMERVMASHINGSLVPLLKDAGALWL 140
>AT3G02000.1 | chr3:332512-332922 REVERSE LENGTH=137
Length = 136
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXX-XXXXXXXXXXXXXPVVFIGGKL 107
CCMCHAVK LF GMGV PAVHELDL P G D++ PVVFIGGKL
Sbjct: 49 CCMCHAVKGLFRGMGVSPAVHELDLHPYGGDIQRALIRLLGCSGSSSPGSLPVVFIGGKL 108
Query: 108 VGAMDRVMAAHINGSLVPLLKEAGALWL 135
VGAMDRVMA+HINGSLVPLLK+AGALWL
Sbjct: 109 VGAMDRVMASHINGSLVPLLKDAGALWL 136
>AT1G28480.1 | chr1:10013634-10014047 REVERSE LENGTH=138
Length = 137
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCMCH V+RL G+GV+PAV E+D + R ++ P V++GG+L
Sbjct: 52 CCMCHVVRRLLLGLGVNPAVLEID-EEREDEVLSELENIGVQGGGGTVKLPAVYVGGRLF 110
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G +DRVMA HI+G LVP+LKE GALWL
Sbjct: 111 GGLDRVMATHISGELVPILKEVGALWL 137
>AT4G15700.1 | chr4:8937545-8937853 FORWARD LENGTH=103
Length = 102
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM H +K LF +GV+P ++ELD RG+++E PVVFIGG+LV
Sbjct: 21 CCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTV-----PVVFIGGQLV 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G ++VM+ H+N SLVP+LK AGALWL
Sbjct: 76 GGANQVMSLHLNRSLVPMLKRAGALWL 102
>AT4G15670.1 | chr4:8929237-8929545 FORWARD LENGTH=103
Length = 102
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM H +K LF +GV+P ++ELD RG+++E PVVFIGG+LV
Sbjct: 21 CCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTV-----PVVFIGGQLV 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G ++VM+ H+N SL+P+LK GALWL
Sbjct: 76 GGANQVMSLHLNRSLIPMLKRVGALWL 102
>AT4G15680.1 | chr4:8931813-8932121 FORWARD LENGTH=103
Length = 102
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM H +K LF GV+P ++ELD RG+++E PVVFIGG+LV
Sbjct: 21 CCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTV-----PVVFIGGQLV 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G ++VM+ H+N SLVP+LK GALWL
Sbjct: 76 GGANQVMSLHLNRSLVPMLKRVGALWL 102
>AT5G18600.1 | chr5:6183466-6183774 REVERSE LENGTH=103
Length = 102
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM H +K L C G +PAV+ELD RGR++E P VFIGG+LV
Sbjct: 21 CCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSPAV-----PGVFIGGELV 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G + VM+ H+NGSL+P+LK AGALW+
Sbjct: 76 GGANEVMSLHLNGSLIPMLKRAGALWV 102
>AT3G21460.1 | chr3:7557567-7557875 REVERSE LENGTH=103
Length = 102
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM HA+KRLF GV PA+ E+D D G+D+E P VF+GGK V
Sbjct: 21 CCMSHAIKRLFYEQGVSPAIVEIDQDMYGKDIEWALARLGCSPTV-----PAVFVGGKFV 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G + VM H+NGSL LLKEAGALWL
Sbjct: 76 GTANTVMTLHLNGSLKILLKEAGALWL 102
>AT4G15690.1 | chr4:8934444-8934752 FORWARD LENGTH=103
Length = 102
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM H +K LF GV+P ++ELD GR++E PVVFIGG+LV
Sbjct: 21 CCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGCSPTV-----PVVFIGGQLV 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G ++VM+ H+N SLVP+LK AGALWL
Sbjct: 76 GGANQVMSLHLNRSLVPMLKRAGALWL 102
>AT4G15660.1 | chr4:8925928-8926236 FORWARD LENGTH=103
Length = 102
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM H +K LF +GV+P ++ELD RG+++E PVVFIGG+LV
Sbjct: 21 CCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTV-----PVVFIGGQLV 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G ++VM+ H+N SL+P+LK GALWL
Sbjct: 76 GGANQVMSLHLNRSLIPMLKRFGALWL 102
>AT3G62950.1 | chr3:23266303-23266614 FORWARD LENGTH=104
Length = 103
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCMCH++K LF +G PA+HELD DP GR++E P VF+GG+ +
Sbjct: 21 CCMCHSIKTLFYELGASPAIHELDKDPEGREME----RALRALGSSNPAVPAVFVGGRYI 76
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G+ +++ H++GSL +LK+A A+WL
Sbjct: 77 GSAKDIISFHVDGSLKQMLKDAKAIWL 103
>AT2G47870.1 | chr2:19603339-19603650 FORWARD LENGTH=104
Length = 103
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCMCH++K LF +G PA+HELD DP+G D+E P VF+GG+ V
Sbjct: 21 CCMCHSIKTLFYELGASPAIHELDKDPQGPDME----RALFRVFGSNPAVPAVFVGGRYV 76
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G+ V++ H++GSL +LK + A+WL
Sbjct: 77 GSAKDVISFHVDGSLKQMLKASNAIWL 103
>AT2G30540.1 | chr2:13011259-13011567 REVERSE LENGTH=103
Length = 102
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM +AV+ LF +GVHP VHE+D DP R++E P +F+GGKL+
Sbjct: 21 CCMSYAVQVLFQDLGVHPTVHEIDKDPECREIE-----KALMRLGCSTPVPAIFVGGKLI 75
Query: 109 GAMDRVMAAHINGSLVPLLK 128
G+ + VM+ H++GSLVPL+K
Sbjct: 76 GSTNEVMSLHLSGSLVPLVK 95
>AT2G47880.1 | chr2:19605124-19605432 FORWARD LENGTH=103
Length = 102
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CC+C+AV+ LF + V P +HE+D DP R++E P VF+GGKLV
Sbjct: 21 CCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALLRLGCSTAV-----PAVFVGGKLV 75
Query: 109 GAMDRVMAAHINGSLVPLLK 128
G+ + VM+ H++GSLVPL+K
Sbjct: 76 GSTNEVMSLHLSGSLVPLIK 95
>AT1G06830.1 | chr1:2097189-2097488 FORWARD LENGTH=100
Length = 99
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CC+ +AV+ LF +GV+P +HE+D DP R++E P VFIGGKLV
Sbjct: 21 CCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPV-----PAVFIGGKLV 75
Query: 109 GAMDRVMAAHINGSLVPLLK 128
G+ + VM+ H++ SLVPL+K
Sbjct: 76 GSTNEVMSMHLSSSLVPLVK 95
>AT3G62960.1 | chr3:23268780-23269088 FORWARD LENGTH=103
Length = 102
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CC+C+AV+ LF + V P +HE+D DP R++E P VF+ GKLV
Sbjct: 21 CCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALVRLGCANAV-----PAVFVSGKLV 75
Query: 109 GAMDRVMAAHINGSLVPLLK 128
G+ + VM+ H++GSLVPL+K
Sbjct: 76 GSTNDVMSLHLSGSLVPLIK 95
>AT5G11930.1 | chr5:3845165-3845611 REVERSE LENGTH=149
Length = 148
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCMCH +K+L +GVHP V E+D D E PV+FIGG V
Sbjct: 76 CCMCHVMKKLLSTVGVHPTVIEID------DGEIAYLAVEAA--------PVLFIGGTCV 121
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALW 134
G + ++A H++G L+P L E GALW
Sbjct: 122 GGFESLVALHLSGQLIPRLVEVGALW 147
>AT4G33040.1 | chr4:15940779-15941213 REVERSE LENGTH=145
Length = 144
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCMCH +KRL +GV P V ELD D L P VFIG + V
Sbjct: 59 CCMCHVMKRLLATIGVIPTVIELD-DHEVSSLPTALQDEYSGGVSVVGPPPAVFIGRECV 117
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G ++ ++A H++G LVP L + GALW+
Sbjct: 118 GGLESLVALHLSGQLVPKLVQVGALWV 144
>AT1G03020.1 | chr1:698207-698515 REVERSE LENGTH=103
Length = 102
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM H++K L G G + V+ELD G ++E P VFIG +LV
Sbjct: 21 CCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELGCKPTV-----PAVFIGQELV 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G +++M+ + L LL+ AGA+W+
Sbjct: 76 GGANQLMSLQVRNQLASLLRRAGAIWI 102
>AT3G62930.1 | chr3:23261538-23261846 REVERSE LENGTH=103
Length = 102
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCM H+++ L G G V+ELD G+++E P VFIG + +
Sbjct: 21 CCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMGCKPSV-----PAVFIGQQFI 75
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G ++VM + L +L+ AGA+W+
Sbjct: 76 GGANQVMTLQVKNQLAAMLRRAGAIWV 102
>AT5G63030.1 | chr5:25286352-25287517 FORWARD LENGTH=126
Length = 125
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
C C VK+L +G V ELD G +++ P VFI G +
Sbjct: 39 CGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTV-----PNVFIKGNHI 93
Query: 109 GAMDRVMAAHINGSLVPLLKEAGAL 133
G DRVM + G LVPLL EAGA+
Sbjct: 94 GGCDRVMETNKQGKLVPLLTEAGAI 118
>AT1G03850.1 | chr1:976428-977685 REVERSE LENGTH=160
Length = 159
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHEL-DLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKL 107
CC+ H KRL GV+P V E+ + D D P+++IGGKL
Sbjct: 73 CCLGHVAKRLLLTHGVNPVVVEIGEEDNNNYD----------NIVSDKEKLPMMYIGGKL 122
Query: 108 VGAMDRVMAAHINGSLVPLLKEA 130
G ++ +MAAHING + + +
Sbjct: 123 FGGLENLMAAHINGHSIKIRTDT 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.141 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,772,405
Number of extensions: 37106
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 22
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 106 (45.4 bits)