BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0382400 Os04g0382400|AK107298
         (201 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47920.1  | chr5:19403458-19404021 REVERSE LENGTH=188          132   1e-31
AT5G13880.1  | chr5:4477477-4478043 REVERSE LENGTH=189             97   7e-21

>AT5G47920.1 | chr5:19403458-19404021 REVERSE LENGTH=188
          Length = 187

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 118/199 (59%), Gaps = 19/199 (9%)

Query: 4   KASMFLKQMVSTIVAVVKAKSTAVRAKTSAMKTRLLIFGVLRNRKLLATAINHKIHAIMG 63
           KA+  +K +V+ + ++ KAKS A++ KTSA KTR+L+  +++++KL   +I++KIH ++G
Sbjct: 3   KATALMKHIVALLSSMAKAKSIAIKNKTSAFKTRVLMLSLVKHKKLGFRSISNKIHHLLG 62

Query: 64  GAAAQDTTNXXXXXXXXXXXXXXSKKAVVLYNTAPSFLTERGYYDHAGXXXXXXXDSDEY 123
            A   D  +                KA+VLYN+  S +     YD          +SD+Y
Sbjct: 63  HADQDDDNDQDQD----------KNKAIVLYNSKASTMAHHEEYD------VHEEESDKY 106

Query: 124 --LTHSLFQXXXXXXXXLVNAPGS-VIDLVRDAKEGEGGEFRLEDEIDHVADVFIRRIHK 180
             L H+LF+             GS VID+VR +KE EG  F+LEDEIDHVAD+FI R HK
Sbjct: 107 PDLRHTLFEGEEDFGDLEEEGQGSSVIDMVRTSKEEEGENFKLEDEIDHVADLFISRFHK 166

Query: 181 QLKLQKLDSFKRFCEMLER 199
           Q+KLQKL SFKR+ EML R
Sbjct: 167 QMKLQKLLSFKRYQEMLAR 185



>AT5G13880.1 | chr5:4477477-4478043 REVERSE LENGTH=189
          Length = 188

 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 26/190 (13%)

Query: 4   KASMFLKQMVSTIVAVVKAKSTAVRAKTSAMKTRLLIFGVLRNRKLLATAINHKIHAIMG 63
           KAS F+KQ+++ +  + K K+  ++ KT A KTRL+IF +L NR ++  +++HK+ +   
Sbjct: 3   KASDFVKQIINMLTCLAKDKTKELKRKTRAFKTRLVIFSLLHNRHMVVGSLSHKLKS--- 59

Query: 64  GAAAQDTTNXXXXXXXXXXXXXXSKKAVVLYNT-----APSFLTERGYYDHAGXXXXXXX 118
                + T+               K  VV+Y+      + + ++    Y +         
Sbjct: 60  -----NQTSKKIDHDNKDVQDYHDKNMVVVYSQNVNAMSSTPVSPHVQYQYTEEEDDEEG 114

Query: 119 DSDEY--LTHSLFQXXXXXXXXLVNAPGSVIDLVRDAKEGEGGEFRLEDEIDHVADVFIR 176
           + ++Y  L HSLF+           A GSVI++V+ +KE  G EFRLEDEID VAD+FI 
Sbjct: 115 EEEKYPDLRHSLFE-----------AEGSVIEMVKHSKEDNGEEFRLEDEIDKVADLFIT 163

Query: 177 RIHKQLKLQK 186
           R H+Q+ LQK
Sbjct: 164 RFHRQMWLQK 173



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,116,599
Number of extensions: 96211
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)