BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0350100 Os04g0350100|AK102139
         (151 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31980.1  | chr2:13609246-13609770 REVERSE LENGTH=148           60   3e-10

>AT2G31980.1 | chr2:13609246-13609770 REVERSE LENGTH=148
          Length = 147

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 12/118 (10%)

Query: 37  VLVGGRTEIRDVGSNKAVQSLGRFAVAEHNRRLRH--GGSGGPADP---VPVKLAFARVV 91
           V++GG++ + ++ +N+ +Q LGR+ V + N++ ++  G  G  A     +   L F+RVV
Sbjct: 34  VVLGGKSGVPNIRTNREIQQLGRYCVEQFNQQAQNEQGNIGSIAKTDTAISNPLQFSRVV 93

Query: 92  EAQKQVVSGVAYYLKVXXXXXXXXXXXXXXXXXXXXXXXXXXXWLKSKELVSFTPASS 149
            AQKQVV+G+ YYL++                           WL SK+L+ FTP  S
Sbjct: 94  SAQKQVVAGLKYYLRI-------EVTQPNGSTRMFDSVVVIQPWLHSKQLLGFTPVVS 144



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,866,799
Number of extensions: 52145
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 61
Effective length of database: 8,639,129
Effective search space: 526986869
Effective search space used: 526986869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)