BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0349300 Os04g0349300|J065169G24
         (218 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04160.2  | chr3:1091647-1094296 REVERSE LENGTH=715             93   1e-19

>AT3G04160.2 | chr3:1091647-1094296 REVERSE LENGTH=715
          Length = 714

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 66/106 (62%)

Query: 1   MRRWVLAASQRYGVVIDAATRDHVWVLLRLCLKAAASEARCSLEDARGAEGGGSGFVDPR 60
           +R+W+L  S RYGV+ID   RDH+++L RLCLK+A  EA     ++   + G    +  +
Sbjct: 263 LRKWILVNSTRYGVIIDTFMRDHIFLLFRLCLKSAVKEACGFRMESDATDVGEQKIMSCK 322

Query: 61  AIRFECPRLVDAVSWLGTQLRILYGESSGRSFAIAAVREAILRAGS 106
           +  FECP  +  +SWL +QL +LYGE +G+ FA+   ++ I+ + S
Sbjct: 323 SSTFECPVFIQVLSWLASQLAVLYGEGNGKFFALDMFKQCIVESAS 368



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,764,106
Number of extensions: 123133
Number of successful extensions: 274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,502,049
Effective search space: 1045752027
Effective search space used: 1045752027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)