BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0341100 Os04g0341100|Os04g0341100
(208 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60680.1 | chr1:22347824-22349236 REVERSE LENGTH=347 214 2e-56
AT1G60730.3 | chr1:22358327-22360082 REVERSE LENGTH=366 214 3e-56
AT1G60750.1 | chr1:22362293-22363854 REVERSE LENGTH=331 212 1e-55
AT1G10810.1 | chr1:3599369-3600757 FORWARD LENGTH=345 211 2e-55
AT1G60690.1 | chr1:22349892-22351668 REVERSE LENGTH=346 211 3e-55
AT1G60710.1 | chr1:22355073-22356627 REVERSE LENGTH=346 208 2e-54
>AT1G60680.1 | chr1:22347824-22349236 REVERSE LENGTH=347
Length = 346
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/145 (72%), Positives = 117/145 (80%), Gaps = 18/145 (12%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
M ELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ+EWSLWSRDAEEDIIP CREL
Sbjct: 143 MRELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQIEWSLWSRDAEEDIIPICREL 202
Query: 61 GIGIV-------GFLSSGPKI-----------DLPRFQPENMEKNTVIFERVSVMATRKG 102
GIGIV GFL++GPK+ LPRFQ EN++ N ++FE+VS MA +KG
Sbjct: 203 GIGIVAYSPLGRGFLAAGPKLAENLENDDFRKTLPRFQQENVDHNKILFEKVSAMAEKKG 262
Query: 103 CTASQLALAWVHHQGSDVCPIPGTS 127
CT +QLALAWVHHQG DVCPIPGT+
Sbjct: 263 CTPAQLALAWVHHQGDDVCPIPGTT 287
>AT1G60730.3 | chr1:22358327-22360082 REVERSE LENGTH=366
Length = 365
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 103/145 (71%), Positives = 117/145 (80%), Gaps = 18/145 (12%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
+GELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITA+Q+EWSLWSRD EEDIIPTCREL
Sbjct: 162 IGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITALQIEWSLWSRDVEEDIIPTCREL 221
Query: 61 GIGIV-------GFLSSGPKI-----------DLPRFQPENMEKNTVIFERVSVMATRKG 102
GIGIV GF +SGPK+ LPRFQ EN++ N ++FE+VS M+ +KG
Sbjct: 222 GIGIVAYSPLGRGFFASGPKLVENLDNNDVRKTLPRFQQENLDHNKILFEKVSAMSEKKG 281
Query: 103 CTASQLALAWVHHQGSDVCPIPGTS 127
CT +QLALAWVHHQG DVCPIPGT+
Sbjct: 282 CTPAQLALAWVHHQGDDVCPIPGTT 306
>AT1G60750.1 | chr1:22362293-22363854 REVERSE LENGTH=331
Length = 330
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/128 (78%), Positives = 111/128 (86%), Gaps = 1/128 (0%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
+GELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ+EWSLWSRD EEDIIPTCREL
Sbjct: 144 IGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQIEWSLWSRDVEEDIIPTCREL 203
Query: 61 GIGIVGFLSSGPK-IDLPRFQPENMEKNTVIFERVSVMATRKGCTASQLALAWVHHQGSD 119
GIGIV + G + LPRFQ EN+E N +++E+V MAT+K CT +QLALAWVHHQG D
Sbjct: 204 GIGIVAYSPLGRGFLGLPRFQQENLENNKILYEKVQAMATKKSCTPAQLALAWVHHQGDD 263
Query: 120 VCPIPGTS 127
VCPIPGTS
Sbjct: 264 VCPIPGTS 271
>AT1G10810.1 | chr1:3599369-3600757 FORWARD LENGTH=345
Length = 344
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/148 (68%), Positives = 116/148 (78%), Gaps = 18/148 (12%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
+GELKKLVEEGKIKYIGLSEA ASTIRRAHAVHP+TAVQLEWSLWSRD EEDIIPTCREL
Sbjct: 142 IGELKKLVEEGKIKYIGLSEACASTIRRAHAVHPLTAVQLEWSLWSRDVEEDIIPTCREL 201
Query: 61 GIGIV-------GFLSSGPKI-----------DLPRFQPENMEKNTVIFERVSVMATRKG 102
GIGIV GF ++GPK LPRFQ EN++ N +++E+V+ MA +K
Sbjct: 202 GIGIVAYSPLGLGFFAAGPKFIESMDNGDYRKGLPRFQQENLDHNKILYEKVNAMAEKKS 261
Query: 103 CTASQLALAWVHHQGSDVCPIPGTSTTK 130
CT +QLALAWVHHQG+DVCPIPGTS K
Sbjct: 262 CTPAQLALAWVHHQGNDVCPIPGTSKIK 289
>AT1G60690.1 | chr1:22349892-22351668 REVERSE LENGTH=346
Length = 345
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/145 (68%), Positives = 116/145 (80%), Gaps = 18/145 (12%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
MGELKKL+EEGKIKYIGLSEASASTIRRAH VHPITAVQLEWSLW+RD EE+I+PTCREL
Sbjct: 142 MGELKKLIEEGKIKYIGLSEASASTIRRAHTVHPITAVQLEWSLWTRDVEEEIVPTCREL 201
Query: 61 GIGIV-------GFLSSGPKI-----------DLPRFQPENMEKNTVIFERVSVMATRKG 102
GIGIV GF +SGPK+ LPRFQ EN++ N +++E+VS M+ +KG
Sbjct: 202 GIGIVSYSPLGRGFFASGPKLVENLDNNDFRKALPRFQQENLDHNKILYEKVSAMSEKKG 261
Query: 103 CTASQLALAWVHHQGSDVCPIPGTS 127
CT +QLALAWVHHQG DVCPIPGT+
Sbjct: 262 CTPAQLALAWVHHQGDDVCPIPGTT 286
>AT1G60710.1 | chr1:22355073-22356627 REVERSE LENGTH=346
Length = 345
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/145 (68%), Positives = 115/145 (79%), Gaps = 18/145 (12%)
Query: 1 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCREL 60
MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ+EWSLW+RD EE+IIPTCREL
Sbjct: 142 MGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQIEWSLWTRDVEEEIIPTCREL 201
Query: 61 GIGIV-------GFLSSGPKI-----------DLPRFQPENMEKNTVIFERVSVMATRKG 102
GIGIV GF +SGPK+ LPRFQ EN++ N +++E+V ++ +KG
Sbjct: 202 GIGIVAYSPLGRGFFASGPKLVENLEKDDFRKALPRFQEENLDHNKIVYEKVCAISEKKG 261
Query: 103 CTASQLALAWVHHQGSDVCPIPGTS 127
CT QLALAWVHHQG DVCPIPGT+
Sbjct: 262 CTPGQLALAWVHHQGDDVCPIPGTT 286
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,690,885
Number of extensions: 119979
Number of successful extensions: 279
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 6
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)