BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0317400 Os04g0317400|Os04g0317400
(117 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65680.1 | chr1:24427266-24428399 FORWARD LENGTH=274 48 1e-06
AT2G20750.1 | chr2:8941185-8942430 FORWARD LENGTH=272 47 1e-06
AT4G28250.1 | chr4:14000446-14001945 REVERSE LENGTH=265 47 3e-06
>AT1G65680.1 | chr1:24427266-24428399 FORWARD LENGTH=274
Length = 273
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 26 LTFKVAEGSSASSLELVTNIA-----ISEVEIKEKGGKD-WVALKESSSNTWTIKSEAPL 79
+TF+V +GS+A+S ++ I +E+K+ D W+++ +S W + +PL
Sbjct: 175 VTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPL 234
Query: 80 KGPFSVRFL-VKNGGYRVVDDVIPESFTAGSEYKSGIQL 117
+ P S+R +++G V +VIP ++ G+ YKS +
Sbjct: 235 RAPLSLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273
>AT2G20750.1 | chr2:8941185-8942430 FORWARD LENGTH=272
Length = 271
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 25 ELTFKVAEGSSASSLELVTNIA-----ISEVEIKEKGGKDWVALKESSSNTWTIKSEAPL 79
+ F V GS+ L L+ I + I++ G K+W+++K W I E PL
Sbjct: 170 NIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI-VEGPL 228
Query: 80 KGPFSVRF-LVKNGGYRVVDDVIPESFTAGSEYKSGIQL 117
KGPFSV+ + N DVIP ++ + Y S +
Sbjct: 229 KGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLNF 267
>AT4G28250.1 | chr4:14000446-14001945 REVERSE LENGTH=265
Length = 264
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 25 ELTFKVAEGSSASSLELVTNIA-----ISEVEIKEKGGKDWVALKESSSNTWTIKSEAPL 79
+ F V EGS+ L L+ I + I++ G ++W+ +K W I PL
Sbjct: 163 NIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIG-GPL 221
Query: 80 KGPFSVRFLVKNGGYRV-VDDVIPESFTAGSEYKSGIQL 117
KGPFS++ + G + DV+P ++ + Y S +
Sbjct: 222 KGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLNF 260
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,998,515
Number of extensions: 74732
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 3
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 105 (45.1 bits)