BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0311500 Os04g0311500|J075021B02
(333 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13630.1 | chr4:7934093-7936029 REVERSE LENGTH=570 67 1e-11
AT1G04890.1 | chr1:1381116-1382546 REVERSE LENGTH=412 57 1e-08
AT4G13160.1 | chr4:7653985-7654833 FORWARD LENGTH=283 54 8e-08
AT5G06560.1 | chr5:2003678-2005543 REVERSE LENGTH=519 53 3e-07
AT1G70750.1 | chr1:26680728-26683147 REVERSE LENGTH=750 51 8e-07
AT2G30690.1 | chr2:13076229-13078595 FORWARD LENGTH=761 50 2e-06
AT5G57830.1 | chr5:23429406-23430860 REVERSE LENGTH=388 49 4e-06
AT5G16720.1 | chr5:5494309-5496562 FORWARD LENGTH=676 49 4e-06
>AT4G13630.1 | chr4:7934093-7936029 REVERSE LENGTH=570
Length = 569
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 49/63 (77%)
Query: 1 MAMILRLQKEKSALEIEARQQRRTADERCAFYEDEVEELRDIVLVRERESRALQKEVDAY 60
+ MILRLQ+EK+++E+EARQ +R +E+ AF +E+ L++I+L RERE L+KEVD Y
Sbjct: 258 LGMILRLQEEKASIEMEARQYQRMIEEKSAFDAEEMSILKEILLRREREKHFLEKEVDTY 317
Query: 61 RRL 63
R++
Sbjct: 318 RQM 320
>AT1G04890.1 | chr1:1381116-1382546 REVERSE LENGTH=412
Length = 411
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 43/58 (74%)
Query: 4 ILRLQKEKSALEIEARQQRRTADERCAFYEDEVEELRDIVLVRERESRALQKEVDAYR 61
I RLQ EK+A+E+EARQ +R +ER F +E+ L+DI++ RERE L+KEV+AYR
Sbjct: 150 IHRLQDEKAAIEMEARQFQRLVEERSTFDAEEMVILKDILIRREREKHFLEKEVEAYR 207
>AT4G13160.1 | chr4:7653985-7654833 FORWARD LENGTH=283
Length = 282
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 4 ILRLQKEKSALEIEARQQRRTADERCAFYEDEVEELRDIVLVRERESRALQKEVDAYRRL 63
ILRLQ +K++LE+E +Q R DE+ A+ E+E+ L++I+ RERE L+KE++ Y+ +
Sbjct: 153 ILRLQADKASLEMEGKQYERMIDEKFAYDEEEMNILKEILFKREREKHFLEKELETYKHI 212
>AT5G06560.1 | chr5:2003678-2005543 REVERSE LENGTH=519
Length = 518
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 29/157 (18%)
Query: 1 MAMILRLQKEKSALEIEARQQRRTADERCAFYEDEVEELRDIVLVRERESRALQKEVDAY 60
M+MILRLQ++K+ L++E RQ +R A+E+ + E+ +L D++ RE+ +AL E AY
Sbjct: 107 MSMILRLQRDKAELQMELRQFKRFAEEKMEHDQQELLDLEDLIYKREQTIQALTFEAQAY 166
Query: 61 RRLXXXXXXXXXXXXXXXXMMTPPSTMVEGEPSTSRSVYKDSRNGAMPQLGNDYGFSLKT 120
+ MM+ E E T +++ SRN +M + NDY + L T
Sbjct: 167 KH----------------RMMS--FGFTEAEVETEKNML--SRNPSM--IENDYQYDLPT 204
Query: 121 PFSPQELLSPIK--VGHIKGINEDKLSAGPSEKIPMV 155
P PIK V G E + EK P+
Sbjct: 205 SDYP-----PIKCNVNENPGPLEADIDVDDVEKYPLA 236
>AT1G70750.1 | chr1:26680728-26683147 REVERSE LENGTH=750
Length = 749
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 46/62 (74%)
Query: 1 MAMILRLQKEKSALEIEARQQRRTADERCAFYEDEVEELRDIVLVRERESRALQKEVDAY 60
MAMI RL +EK+A+++EA Q +R +E+ F ++ ++ L ++++ RE+E+ L+KE++ Y
Sbjct: 449 MAMINRLHEEKAAMQMEALQYQRMMEEQAEFDQEALQLLNELMVNREKENAELEKELEVY 508
Query: 61 RR 62
R+
Sbjct: 509 RK 510
>AT2G30690.1 | chr2:13076229-13078595 FORWARD LENGTH=761
Length = 760
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 1 MAMILRLQKEKSALEIEARQQRRTADERCAFYEDEVEELRDIVLVRERESRALQKEVDAY 60
MAMI RLQ+EK+AL +EA Q R DE+ D +E D++ RE+E + L+ E++ Y
Sbjct: 649 MAMITRLQEEKAALHMEALQYLRMMDEQAEHDMDALERANDVLADREKEIQDLEMELEYY 708
Query: 61 R 61
R
Sbjct: 709 R 709
>AT5G57830.1 | chr5:23429406-23430860 REVERSE LENGTH=388
Length = 387
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 3 MILRLQKEKSALEIEARQQRRTADERCAFYEDEVEELRDIVLVRERESRALQKEVDAYR 61
MILRLQ EK+ALE+EA Q +R A+E+ E + D++ +E E +L+ +V AYR
Sbjct: 54 MILRLQGEKAALEMEASQYKRMAEEKMCHAETSLVLFEDLIYQKEMEIASLEFQVQAYR 112
>AT5G16720.1 | chr5:5494309-5496562 FORWARD LENGTH=676
Length = 675
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 43/61 (70%)
Query: 1 MAMILRLQKEKSALEIEARQQRRTADERCAFYEDEVEELRDIVLVRERESRALQKEVDAY 60
MAMI RLQ+EK+ +++EA Q +R +E+ + ++ ++ L +++ RE+E LQ+E++ Y
Sbjct: 393 MAMITRLQEEKAKVQMEALQYQRMMEEQAEYDQEALQLLNHLMVKREKEKEQLQRELEVY 452
Query: 61 R 61
R
Sbjct: 453 R 453
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,708,101
Number of extensions: 282771
Number of successful extensions: 673
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 11
Length of query: 333
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,392,385
Effective search space: 1963818090
Effective search space used: 1963818090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)