BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0303900 Os04g0303900|AK108051
         (259 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59980.1  | chr3:22154528-22155570 REVERSE LENGTH=274          240   5e-64
AT4G13780.1  | chr4:7993366-7998433 REVERSE LENGTH=798            135   3e-32
AT2G40660.1  | chr2:16966011-16968866 FORWARD LENGTH=390          113   9e-26

>AT3G59980.1 | chr3:22154528-22155570 REVERSE LENGTH=274
          Length = 273

 Score =  240 bits (613), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 138/166 (83%)

Query: 94  LLDIRVGRVVKAWRHPEADTLYVEEVDVGEEQPRTICSGLVNYLPIDQLQDSNVIVLANL 153
           LLDI+VGR+VKAW+H EAD+LYVEEVD+GE +PR ICSGLV Y+P+D LQ ++V+VLANL
Sbjct: 108 LLDIKVGRIVKAWQHEEADSLYVEEVDIGEAEPRIICSGLVKYVPLDLLQGASVVVLANL 167

Query: 154 KPRNMRGIKSNGMLMAASDASHENVELLTPPEGSVPGERVWFGTEDGKDRQSEAASPNQV 213
           KPRNMRG+KS GML+AASDA+HENVELL PPEGSVPG+RVWFG E+  ++  E A PN+V
Sbjct: 168 KPRNMRGVKSCGMLLAASDAAHENVELLVPPEGSVPGDRVWFGNEEDLEQLPEPAPPNKV 227

Query: 214 QKKKIWESVQPHLRTSENCTAFLGEHPMRTSAGVVFCKTLQGARVS 259
           QKKK+WE VQP L+T  +  + L EH MRTS+G+V  K+L+ A +S
Sbjct: 228 QKKKMWELVQPLLKTDASGVSMLKEHLMRTSSGLVTSKSLRNANIS 273



>AT4G13780.1 | chr4:7993366-7998433 REVERSE LENGTH=798
          Length = 797

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 102/159 (64%), Gaps = 12/159 (7%)

Query: 95  LDIRVGRVVKAWRHPEADTLYVEEVDVGEEQPRTICSGLVNYLPIDQLQDSNVIVLANLK 154
           LDIRVG++VKA +HP+AD LYVEE+DVG  + RT+ SGLV Y+P++++Q+  V VL NLK
Sbjct: 639 LDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLK 698

Query: 155 PRNMRGIKSNGMLMAASDASHENVELLTPPEGSVPGERVWFGTEDGKDRQSEAASPNQV- 213
           P  MR I S  M++AAS +    VEL+ PP+ +  GERV F   +G+        P+ V 
Sbjct: 699 PAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGE--------PDDVL 750

Query: 214 -QKKKIWESVQPHLRTSENCTAFLGEHPMRTSAGVVFCK 251
             KKK+WE++   L T EN  A   + P  TSAGV  CK
Sbjct: 751 NPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGV--CK 787



>AT2G40660.1 | chr2:16966011-16968866 FORWARD LENGTH=390
          Length = 389

 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 89/153 (58%), Gaps = 6/153 (3%)

Query: 94  LLDIRVGRVVKAWRHPEADTLYVEEVDVGEEQPRTICSGLVNYLPIDQLQDSNVIVLANL 153
           LL+I+VG + KAW+HP AD+L VEE+DVGE++ R + SGL  +   + L +  V ++ N+
Sbjct: 231 LLNIQVGLIRKAWKHPSADSLLVEEIDVGEDKVRQVVSGLAKFCSPEDLTNRLVALITNV 290

Query: 154 KPRNMRGIKSNGMLMAASDASHENVELLTPPEGSVPGERVWFGTEDGKDRQSEAASPNQV 213
           KP  +R + S G+++ AS   H  VE L PP G+ PGERV F   +GK    +  +P   
Sbjct: 291 KPGKLRDVMSQGLVLCASSEDHSVVEPLLPPAGAKPGERVSFSGIEGKPE--DVLNP--- 345

Query: 214 QKKKIWESVQPHLRTSENCTAFLGEHPMRTSAG 246
            KKK  E + P L T EN  A        TSAG
Sbjct: 346 -KKKQLEKITPGLYTDENGVATYKGIQFMTSAG 377



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,384,995
Number of extensions: 159271
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 3
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)