BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0269700 Os04g0269700|AK069600
         (209 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45920.1  | chr5:18622822-18624677 FORWARD LENGTH=242           66   1e-11
AT5G62930.1  | chr5:25254912-25256357 FORWARD LENGTH=243           64   7e-11

>AT5G45920.1 | chr5:18622822-18624677 FORWARD LENGTH=242
          Length = 241

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 38/54 (70%)

Query: 148 DDPSKLPERTNEATGTYAQACLTVAKELNHPVIDIWTKMQQFPDWQTSALCRGL 201
           ++ + LPERTNE  G YA+AC+ VA+E    V D+W+KMQQ P+WQT  L  GL
Sbjct: 138 ENTTGLPERTNEVAGLYAKACIAVAEECQISVTDLWSKMQQIPNWQTECLWDGL 191



>AT5G62930.1 | chr5:25254912-25256357 FORWARD LENGTH=243
          Length = 242

 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 144 MYGEDDPSKLPERTNEATGTYAQACLTVAKELNHPVIDIWTKMQQFPDWQTSALCRGLEA 203
           +YGE    K PERTNE TG YAQ C+ +A+EL    +++W+KMQ+  DWQ   L  GL  
Sbjct: 134 IYGEK-AMKEPERTNETTGVYAQHCVALAEELGLRCVNLWSKMQETNDWQKKYLSDGLHL 192

Query: 204 KP 205
            P
Sbjct: 193 TP 194



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,726,969
Number of extensions: 123306
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)