BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0255500 Os04g0255500|Os04g0255500
         (71 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19940.1  | chr1:6918323-6920268 REVERSE LENGTH=516             49   4e-07
AT1G75680.1  | chr1:28417215-28419231 REVERSE LENGTH=526           49   8e-07

>AT1G19940.1 | chr1:6918323-6920268 REVERSE LENGTH=516
          Length = 515

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/28 (71%), Positives = 22/28 (78%)

Query: 1   MSYLVRYGDLYPQLVHHRGASIPVDVDT 28
           MSYLV YG+ YP+ VHHRGASIP D  T
Sbjct: 418 MSYLVGYGEKYPEFVHHRGASIPADATT 445



>AT1G75680.1 | chr1:28417215-28419231 REVERSE LENGTH=526
          Length = 525

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 4/41 (9%)

Query: 2   SYLVRYGDLYPQLVHHRGASIPVDVDTVLVISIMDGRKMYH 42
           S++V YGD YPQ VHHRGASIP D  T      +DG K ++
Sbjct: 428 SFVVGYGDKYPQFVHHRGASIPADATT----GCLDGFKWFN 464



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,295,692
Number of extensions: 35991
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 71
Length of database: 11,106,569
Length adjustment: 43
Effective length of query: 28
Effective length of database: 9,927,681
Effective search space: 277975068
Effective search space used: 277975068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)