BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0244900 Os04g0244900|Os04g0244900
(243 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07740.1 | chr5:2459076-2466580 REVERSE LENGTH=1650 126 9e-30
AT5G58160.1 | chr5:23533724-23539465 FORWARD LENGTH=1325 117 8e-27
AT5G07650.1 | chr5:2416375-2421814 REVERSE LENGTH=816 115 2e-26
AT5G07760.1 | chr5:2468239-2473657 FORWARD LENGTH=854 109 1e-24
AT2G25050.2 | chr2:10654108-10659383 REVERSE LENGTH=1136 108 2e-24
AT1G31810.1 | chr1:11399922-11405761 REVERSE LENGTH=1231 108 3e-24
AT5G07770.1 | chr5:2474816-2479022 FORWARD LENGTH=723 106 1e-23
AT3G32400.1 | chr3:13356995-13360572 REVERSE LENGTH=489 102 1e-22
AT5G07780.1 | chr5:2479707-2482638 FORWARD LENGTH=465 95 3e-20
>AT5G07740.1 | chr5:2459076-2466580 REVERSE LENGTH=1650
Length = 1649
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 79/104 (75%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
++KGL+K+ QEL ASESDGPVS+VFRKTL +F + +V ++S+LY+ VG++ADALA+Y
Sbjct: 1526 IIKGLEKLNQELTASESDGPVSDVFRKTLGDFISVAETEVATVSSLYSVVGRNADALAHY 1585
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDP +CPFEQ VT+TLLNF+ LF+KAHEEN
Sbjct: 1586 FGEDPNRCPFEQ-------------VTATLLNFIRLFKKAHEEN 1616
>AT5G58160.1 | chr5:23533724-23539465 FORWARD LENGTH=1325
Length = 1324
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
+ KGL+KV QEL+ SE+DGP+S F K LKEF + A+VRSL++LY+ VG++ D L Y
Sbjct: 1175 INKGLEKVVQELSLSENDGPISHNFNKILKEFLHYAEAEVRSLASLYSGVGRNVDGLILY 1234
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDPAKCPFEQ V STLLNFV LF +AHEEN
Sbjct: 1235 FGEDPAKCPFEQ-------------VVSTLLNFVRLFNRAHEEN 1265
>AT5G07650.1 | chr5:2416375-2421814 REVERSE LENGTH=816
Length = 815
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
+ KGL+K+ ++L ASESDGPVS+VFRK LK+F + V ++S+LY+ VGK+ADALA+Y
Sbjct: 704 ITKGLEKLNKQLTASESDGPVSQVFRKVLKDFISMAETQVATVSSLYSSVGKNADALAHY 763
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDP PFE+ VT+TLL+F+ LF+KAHEEN
Sbjct: 764 FGEDPNHYPFEK-------------VTTTLLSFIRLFKKAHEEN 794
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
++K L+K++QEL ASE+DGP SEVF TLK+F + ++ ++ +LY+ V K ADAL Y
Sbjct: 365 IIKRLEKLKQELTASETDGPASEVFCNTLKDFISIAETEMATVLSLYSVVRKKADALPPY 424
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDP +CPFEQ +T TL NF+ LF+KAHEEN
Sbjct: 425 FGEDPNQCPFEQ-------------LTMTLFNFIKLFKKAHEEN 455
>AT5G07760.1 | chr5:2468239-2473657 FORWARD LENGTH=854
Length = 853
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 33/174 (18%)
Query: 28 LNALCVTGTPGAIESVASLHYAYLDELNLLGLHAHPPLSATELAASKISRSTAGCFXXXX 87
L++LCV + +AS LD H L + E A+ K +S A
Sbjct: 347 LDSLCVKSMHNFCKVLASEASDLLD--------VHKDLQSLESASKKQLKSLA------- 391
Query: 88 XXXXXXXXXXVVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEV 147
+++ L+K+ QEL A+E+DGP S+VFR TLK+F + +V+++ +LY+ V
Sbjct: 392 -----EEMQDIIRDLEKLNQELTAAETDGPDSQVFRNTLKDFISIAETEVKTVLSLYSVV 446
Query: 148 GKSADALAYYFGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
GK+A AL YFGEDP CPFEQ VT+TLL+F+ LF KAHEEN
Sbjct: 447 GKNAVALVNYFGEDPKWCPFEQ-------------VTATLLHFIRLFEKAHEEN 487
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
+ KGLQK+ QEL ASESDGP+SEVFRK LK+F + V ++S+LY+ VG + DAL +Y
Sbjct: 734 ITKGLQKLNQELTASESDGPISEVFRKLLKDFISVAETQVATVSSLYSSVGGNTDALVHY 793
Query: 158 FGEDPAKCPFEQGS 171
FGEDP PFEQ +
Sbjct: 794 FGEDPNDYPFEQAA 807
>AT2G25050.2 | chr2:10654108-10659383 REVERSE LENGTH=1136
Length = 1135
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
+ KGL+KV QE ASE+DG +S+ FR LKEF + +VRSL++LY+ VG SADALA Y
Sbjct: 1017 ISKGLEKVVQEFTASETDGQISKHFRMNLKEFLSVAEGEVRSLASLYSTVGGSADALALY 1076
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDPA+ PFEQ V STL NFV +F ++HEEN
Sbjct: 1077 FGEDPARVPFEQ-------------VVSTLQNFVRIFVRSHEEN 1107
>AT1G31810.1 | chr1:11399922-11405761 REVERSE LENGTH=1231
Length = 1230
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 72/103 (69%), Gaps = 13/103 (12%)
Query: 99 VKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYYF 158
KGL+KVEQEL ASE+DG +S FRK LKEF D + +V++L++LY+EVG++AD+L++YF
Sbjct: 1099 TKGLEKVEQELMASENDGAISLGFRKVLKEFLDMADEEVKTLASLYSEVGRNADSLSHYF 1158
Query: 159 GEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
GEDPA+CPFEQ VT L F+ F K+ EEN
Sbjct: 1159 GEDPARCPFEQ-------------VTKILTLFMKTFIKSREEN 1188
>AT5G07770.1 | chr5:2474816-2479022 FORWARD LENGTH=723
Length = 722
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 73/104 (70%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
+ KGL+K++QEL ASE+DGPVS+VFRK LK+F ++ V ++S LY+ +ADALA+Y
Sbjct: 462 ITKGLEKLKQELTASETDGPVSQVFRKLLKDFISSAETQVATVSTLYSSARINADALAHY 521
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDP PFE+ V++TLL+F+ LF+KAH+EN
Sbjct: 522 FGEDPNHYPFEK-------------VSATLLSFIRLFKKAHQEN 552
>AT3G32400.1 | chr3:13356995-13360572 REVERSE LENGTH=489
Length = 488
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 67/102 (65%), Gaps = 13/102 (12%)
Query: 100 KGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYYFG 159
KGL+KV QE ASE+D +S+ F LKEF + +VRSL++LY+ VG SADALA YFG
Sbjct: 372 KGLEKVVQEFTASETDCQISKHFHMNLKEFLSVAEGEVRSLASLYSTVGGSADALALYFG 431
Query: 160 EDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
EDPA+ PFEQ V STL NFV +F ++HEEN
Sbjct: 432 EDPARVPFEQ-------------VVSTLQNFVRIFVRSHEEN 460
>AT5G07780.1 | chr5:2479707-2482638 FORWARD LENGTH=465
Length = 464
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 68/104 (65%), Gaps = 16/104 (15%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
+ KGL+K++QEL ASE+DGPVS+VFRK LKEF + V ++ ALY +A+ALA+Y
Sbjct: 356 ITKGLEKLKQELTASETDGPVSQVFRKLLKEFISNAETQVATVMALYYPARGNAEALAHY 415
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FG PFEQ VT+TLL+F+ LF+KAHEEN
Sbjct: 416 FG---YHYPFEQ-------------VTATLLSFIRLFKKAHEEN 443
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,129,954
Number of extensions: 130076
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 11
Length of query: 243
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,474,633
Effective search space: 1245771051
Effective search space used: 1245771051
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)