BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0235600 Os04g0235600|AK110794
         (141 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00130.1  | chrC:11529-12798 REVERSE LENGTH=185                165   7e-42

>ATCG00130.1 | chrC:11529-12798 REVERSE LENGTH=185
          Length = 184

 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 100/132 (75%)

Query: 7   LKDLLDNRKQRILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKA 66
           L DLLDNRKQRIL+TIRNSEELR G I+QLE AR RL+ VE EAD++R+NGYSEIEREK 
Sbjct: 49  LNDLLDNRKQRILNTIRNSEELREGAIQQLENARARLRNVETEADKFRVNGYSEIEREKL 108

Query: 67  NLINATSISLEQLEKSKNETLYFEKQRAMNXXXXXXXXXXXXGALGTLNSCLNTELHFRT 126
           NLIN+T  +L+QLE  KNET+ FE+QR +N            GA+GTLNSCL+ ELH RT
Sbjct: 109 NLINSTYKTLKQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSNELHLRT 168

Query: 127 IRANISILGAME 138
           I ANI + G M+
Sbjct: 169 INANIGMFGTMK 180



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,317,477
Number of extensions: 72517
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 106 (45.4 bits)