BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0201800 Os04g0201800|Os04g0201800
         (203 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39130.1  | chr2:16323171-16326744 REVERSE LENGTH=551           87   8e-18
AT3G54830.1  | chr3:20311901-20315030 REVERSE LENGTH=547           65   2e-11

>AT2G39130.1 | chr2:16323171-16326744 REVERSE LENGTH=551
          Length = 550

 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 80/134 (59%), Gaps = 11/134 (8%)

Query: 65  QPSSYTQQWPQSYRQSIDMYSSVQSPNLSFLGTPTLSRLSNSFLTASF-RGKPPEIISGL 123
           +PSSYT  WPQSYRQSID+YSSV SP + FLG  +++R  +SFL++   R   PE +  +
Sbjct: 47  KPSSYTTAWPQSYRQSIDLYSSVPSPGIGFLGNNSMTRFGSSFLSSGLIRRHTPESLPTV 106

Query: 124 IKPLLPTTAAADDEGDRRQQQHEDGRKSSQYLLPPRRPSSLQKIPEDQKPLVVGHHEVGP 183
            KPLL      +++ D  +Q     R SSQ LL P  PS    + +D+K  +V  HE+  
Sbjct: 107 TKPLL------EEQAD--EQALPKHRLSSQGLLSP-IPSRRGSMRKDEKSSMVS-HEIPM 156

Query: 184 YRQCTYTQGVLNGM 197
            R  +Y Q VLNG+
Sbjct: 157 SRNSSYGQAVLNGL 170



>AT3G54830.1 | chr3:20311901-20315030 REVERSE LENGTH=547
          Length = 546

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 24/135 (17%)

Query: 64  SQPSSYTQQWPQSYRQSIDMYSSVQSPNLSFLGTPTLSRLSNSFLTASF-RGKPPEIISG 122
           S+ S Y+  WP+SYRQSIDM+ SV SPNL FL   ++SR  +SF++++  R   PE +  
Sbjct: 49  SKASPYSTAWPKSYRQSIDMFGSVPSPNLGFLANSSMSRRGSSFMSSTLTRRHTPESLPC 108

Query: 123 LIKPLLPTTAAADDEGDRRQQQHEDGRKSSQYLLPPRRPSSLQKIPEDQKPLVVGHHEVG 182
           + KPLL      D+E                   P  + S+   +P      +V  H++G
Sbjct: 109 VTKPLLE-----DEEA------------------PKHKLSTHSLLPSKPSSSMVVSHDMG 145

Query: 183 PYRQCTYTQGVLNGM 197
                ++ Q VLNG+
Sbjct: 146 ISNDSSFGQAVLNGV 160



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,915,736
Number of extensions: 156813
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)