BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0190000 Os04g0190000|AK064761
(117 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46760.1 | chr2:19213028-19215166 REVERSE LENGTH=604 72 7e-14
AT5G56490.1 | chr5:22871507-22873420 FORWARD LENGTH=578 70 2e-13
AT2G46750.1 | chr2:19208443-19210909 REVERSE LENGTH=592 70 3e-13
AT1G32300.1 | chr1:11651342-11653365 FORWARD LENGTH=596 69 4e-13
AT2G46740.1 | chr2:19205182-19207455 REVERSE LENGTH=591 66 3e-12
AT5G11540.1 | chr5:3703002-3704981 REVERSE LENGTH=586 49 7e-07
>AT2G46760.1 | chr2:19213028-19215166 REVERSE LENGTH=604
Length = 603
Score = 71.6 bits (174), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 28 DLDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVASLP 84
+ +AAKVSLG ISQVTL LQP+FK S+ +V RNDSD + +G HEF D LP
Sbjct: 222 EFNAAKVSLGVLGVISQVTLKLQPMFKRSLRYVMRNDSDFGDQAVTFGMKHEFADFIWLP 281
Query: 85 RRRMVVYREHGRAADHA---GFLDAVDPF 110
+ VVYR R A + G LD + PF
Sbjct: 282 SQGKVVYRMDDRVAVNTSGNGLLDFM-PF 309
>AT5G56490.1 | chr5:22871507-22873420 FORWARD LENGTH=578
Length = 577
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 26 DPD-LDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVA 81
DP+ AAKVSLG ISQVT LQP+FK S+ +V RNDSD + +G HEF D
Sbjct: 201 DPEEFRAAKVSLGVLGVISQVTFELQPMFKRSLNYVMRNDSDFGDQAVSFGERHEFADFL 260
Query: 82 SLPRRRMVVYREHGR 96
LP + VVYR GR
Sbjct: 261 WLPSQGKVVYRMDGR 275
>AT2G46750.1 | chr2:19208443-19210909 REVERSE LENGTH=592
Length = 591
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 28 DLDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVASLP 84
+ +AAKVSLG ISQVT LQP+FK S+ + RNDSD + +G HEF D LP
Sbjct: 214 EFNAAKVSLGVLGVISQVTFELQPMFKRSLTYTMRNDSDFEDQAVTFGKKHEFADFIWLP 273
Query: 85 RRRMVVYREHGRAA 98
+ VVYR R A
Sbjct: 274 SQGKVVYRRDDRVA 287
>AT1G32300.1 | chr1:11651342-11653365 FORWARD LENGTH=596
Length = 595
Score = 68.9 bits (167), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 26 DPD-LDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVA 81
DPD AAKVSLG ISQVT LQP+FK S+ FV +NDSD + +G HEF D
Sbjct: 202 DPDEFRAAKVSLGVLGVISQVTFQLQPMFKRSLTFVMQNDSDFGDQAVTFGEKHEFADFL 261
Query: 82 SLPRRRMVVYREHGR 96
LP + VVYR R
Sbjct: 262 WLPSQGKVVYRMDDR 276
>AT2G46740.1 | chr2:19205182-19207455 REVERSE LENGTH=591
Length = 590
Score = 66.2 bits (160), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 28 DLDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVASLP 84
+ +AAKVSLG ISQVT LQP+FK S+ +V RND D + +G HEF D LP
Sbjct: 218 EFNAAKVSLGVLGVISQVTFELQPMFKRSLKYVMRNDLDFNDEALTFGKKHEFADFVWLP 277
Query: 85 RRRMVVYREHGRAA 98
+ VVYR R A
Sbjct: 278 SQGKVVYRMDDRVA 291
>AT5G11540.1 | chr5:3703002-3704981 REVERSE LENGTH=586
Length = 585
Score = 48.5 bits (114), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 26 DPDLDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVAS 82
D L+A KVSLG IS+V L+++ FK SV + +D + ++ G +EFGD+
Sbjct: 207 DTLLNAVKVSLGVLGVISKVKLSIEKAFKRSVTYNFTSDVALEDIFMEHGKKYEFGDITW 266
Query: 83 LPRRRMVVYREHGRA 97
P R+ VYR RA
Sbjct: 267 YPSRKTAVYRYDIRA 281
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,064,970
Number of extensions: 61681
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 6
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)