BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0182800 Os04g0182800|AK063110
         (253 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43430.1  | chr5:17453656-17455111 FORWARD LENGTH=252          374   e-104

>AT5G43430.1 | chr5:17453656-17455111 FORWARD LENGTH=252
          Length = 251

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/255 (71%), Positives = 219/255 (85%), Gaps = 6/255 (2%)

Query: 1   MKILVAVKRVVDYAVKVRVRPDRTGVETASVKMSMNPFCEIAVEEALRLRESGXXXXXXX 60
           MKILVAVKRVVDYAVK+RV+PD+TGVET +VKMSMNPFCEIA+EEALR++E+G       
Sbjct: 1   MKILVAVKRVVDYAVKIRVKPDKTGVETQNVKMSMNPFCEIALEEALRIKEAGFAKEVIA 60

Query: 61  XXXGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILG 120
              GPSQ  DTLRT LAMGADR +HV    + +   LPL +AKIL++LA  ENPGL+ LG
Sbjct: 61  VSIGPSQCVDTLRTGLAMGADRGIHV----ETNSIFLPLTIAKILKSLADVENPGLIFLG 116

Query: 121 KQAIDDDCNQTGQMLAGLLNWPQGTFASKVILNKEK--ATVEREVDGGIETISLDLPAVI 178
           KQAIDDDCNQTGQM+A LL WPQ TFASKV+L+K+K  ATV+REVDGG+ET+++DLPAVI
Sbjct: 117 KQAIDDDCNQTGQMVAALLGWPQATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVI 176

Query: 179 TTDLRLNQPRYATLPNIMKAKSKVIKKVTPEDLDVDIRSDMEVVEVTEPPKRKAGVILSS 238
           TTDLRLNQPRYA+LPNIMKAKSK IKK+T +DL VDI+SD+E++EVTEPPKRK+GV++SS
Sbjct: 177 TTDLRLNQPRYASLPNIMKAKSKPIKKMTVQDLKVDIKSDIEILEVTEPPKRKSGVMVSS 236

Query: 239 VDELVDRLKNEARVL 253
           VDEL+D+LKNEA V+
Sbjct: 237 VDELIDKLKNEAHVV 251



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,691,535
Number of extensions: 177651
Number of successful extensions: 489
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)