BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0151900 Os04g0151900|AK066797
(249 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243 266 8e-72
AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243 266 1e-71
AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294 181 2e-46
AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283 171 5e-43
AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277 164 3e-41
>AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243
Length = 242
Score = 266 bits (680), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 179/253 (70%), Gaps = 22/253 (8%)
Query: 4 IKSLSNACKVSFSPDGPISDEALERVRALLDEIRPIDVGLDNEAQIARNWNNSTRQPNGR 63
I+ L N CK S SP+GP+S+EAL++VR +L++I+P DVGL+ EAQ+ RNW P
Sbjct: 5 IQRLFNTCKSSLSPNGPVSEEALDKVRNVLEKIKPSDVGLEQEAQLVRNW------PGPG 58
Query: 64 RGRNGANQFTSPIKYLHIHESESFSMGIFCMPPSSVIPLHNHPGMTVLSKLLYGTLHAES 123
RNG + IKYL +HE +SFS+GIFCMPP S+IPLHNHPGMTVLSKL+YG++H +S
Sbjct: 59 NERNGNHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKS 118
Query: 124 YDWIDVTDPTDQLQELSVRPARLVRDREMSAPE-TTILYPNRGGNIHTFRAITPCALFDV 182
YDW + D ++ L RPA+LV+D +M++P T LYP GGNIH F+AIT CA+FD+
Sbjct: 119 YDWAE-PDQSELDDPLQARPAKLVKDIDMTSPSPATTLYPTTGGNIHCFKAITHCAIFDI 177
Query: 183 LSPPYSAEKGRDCSYFRKSSVRETPPVVLPGEIN--SAEVI----WLEELEDHQPPEGFV 236
LSPPYS+ GR C+YFRKS P + LPGEI + EVI WLEE +QPP+ FV
Sbjct: 178 LSPPYSSTHGRHCNYFRKS-----PMLDLPGEIEVMNGEVISNVTWLEE---YQPPDNFV 229
Query: 237 VARGLYKGPVIRR 249
+ R Y+GPVIR+
Sbjct: 230 IWRVPYRGPVIRK 242
>AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243
Length = 242
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/252 (53%), Positives = 180/252 (71%), Gaps = 24/252 (9%)
Query: 5 KSLSNACKVSFSPDGPISDEALERVRALLDEIRPIDVGLDNEAQIARNWNNSTRQPNGRR 64
+ L N CK SFS DGPI+++ALE+VR +L++I+P DVG++ +AQ+AR+ + +
Sbjct: 6 QRLYNTCKASFSSDGPITEDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNE----- 60
Query: 65 GRNGANQFTSPIKYLHIHESESFSMGIFCMPPSSVIPLHNHPGMTVLSKLLYGTLHAESY 124
RNG+NQ IKYLH+HE +SFS+GIFCMPPSS+IPLHNHPGMTVLSKL+YG++H +SY
Sbjct: 61 -RNGSNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSY 119
Query: 125 DWID--VTDPTDQLQELSVRPARLVRDREMSAPE-TTILYPNRGGNIHTFRAITPCALFD 181
DW++ +T+P D QE RPA+LV+D EM+A T LYP GGNIH F+AIT CA+ D
Sbjct: 120 DWLEPQLTEPEDPSQE--ARPAKLVKDTEMTAQSPVTTLYPKSGGNIHCFKAITHCAILD 177
Query: 182 VLSPPYSAEKGRDCSYFRKSSVRETPPVVLPGEIN-----SAEVIWLEELEDHQPPEGFV 236
+L+PPYS+E R C+YFRKS + LPGE+ +V WLEE QPP+ FV
Sbjct: 178 ILAPPYSSEHDRHCTYFRKSRRED-----LPGELEVDGEVVTDVTWLEEF---QPPDDFV 229
Query: 237 VARGLYKGPVIR 248
+ R Y+GPVIR
Sbjct: 230 IRRIPYRGPVIR 241
>AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294
Length = 293
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 145/251 (57%), Gaps = 24/251 (9%)
Query: 4 IKSLSNACKVSFSPDGPI---SDEALERVRALLDEIRPIDVGLDNEAQIARNWNNSTRQP 60
++ L N CK FS GP S++ ++++R +LD+++P DVGL + P
Sbjct: 58 VRRLFNTCKEVFSNGGPGVIPSEDKIQQLREILDDMKPEDVGL------------TPTMP 105
Query: 61 NGRRGRNGANQFTSPIKYLHIHESESFSMGIFCMPPSSVIPLHNHPGMTVLSKLLYGTLH 120
R + + PI YLH+H+ + FS+GIFC+PPS VIPLHNHPGMTV SKLL+GT+H
Sbjct: 106 YFRPNSGVEARSSPPITYLHLHQCDQFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMH 165
Query: 121 AESYDWIDVTDPTDQLQELSVRPARLVRDREMSAP-ETTILYPNRGGNIHTFRAITPCAL 179
+SYDW+ V P +++ R A+L D +AP +ILYP GGN+H F AIT CA+
Sbjct: 166 IKSYDWV-VDAP---MRDSKTRLAKLKVDSTFTAPCNASILYPEDGGNMHRFTAITACAV 221
Query: 180 FDVLSPPYSAEKGRDCSYFRK---SSVRETPPVVLPGEINSAEVIWLEELEDHQPPEGFV 236
DVL PPY +GR C+YF + + VL E WL+E +D+ P +
Sbjct: 222 LDVLGPPYCNPEGRHCTYFLEFPLDKLSSEDDDVLSSEEEKEGYAWLQERDDN-PEDHTN 280
Query: 237 VARGLYKGPVI 247
V LY+GP +
Sbjct: 281 VVGALYRGPKV 291
>AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283
Length = 282
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 146/258 (56%), Gaps = 20/258 (7%)
Query: 2 PKIKSLSNACKVSFSPDGPI-SDEALERVRALLDEIRPIDVGLDNEAQIA-RNWNNSTRQ 59
PK++ L + CK +F+ P + A++++ ++LD + P DVGL+ +Q R + S
Sbjct: 33 PKVQELYDLCKETFTGKAPSPASMAIQKLCSVLDSVSPADVGLEEVSQDDDRGYGVSGVS 92
Query: 60 PNGRRGRNGANQFTSPIKYLHIHESESFSMGIFCMPPSSVIPLHNHPGMTVLSKLLYGTL 119
R GR + PI +L IHE ++F+M IFC P SSVIPLH+HP M V SK+LYG+L
Sbjct: 93 RFNRVGR-----WAQPITFLDIHECDTFTMCIFCFPTSSVIPLHDHPEMAVFSKILYGSL 147
Query: 120 HAESYDWID----VTDPTDQLQELSVRPARLVRDREMSAPETTI--LYPNRGGNIHTFRA 173
H ++YDW++ +T L R A+LV D+ ++ P++ I LYP GGN+H F A
Sbjct: 148 HVKAYDWVEPPCIITQDKGVPGSLPARLAKLVSDKVIT-PQSEIPALYPKTGGNLHCFTA 206
Query: 174 ITPCALFDVLSPPYSAEKGRDCSYFRK---SSVRETPPVVLPGEINSAEVIWLEELEDHQ 230
+TPCA+ D+LSPPY GR CSY+ S+ + E E WL +++
Sbjct: 207 LTPCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYAWLVQIDT-- 264
Query: 231 PPEGFVVARGLYKGPVIR 248
P+ + G Y GP IR
Sbjct: 265 -PDDLHMRPGSYTGPTIR 281
>AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277
Length = 276
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 139/256 (54%), Gaps = 38/256 (14%)
Query: 4 IKSLSNACKVSFSPDGPI----SDEALERVRALLDEIRPIDVGLDNEAQIARNWNNSTRQ 59
++ L + CK F+ DG S E +E +RA+LDEI+P DVG++ + R+
Sbjct: 47 VQKLFDTCKKVFA-DGKSGTVPSQENIEMLRAVLDEIKPEDVGVNPKMSYFRS------T 99
Query: 60 PNGRRGRNGANQFTSP-IKYLHIHESESFSMGIFCMPPSSVIPLHNHPGMTVLSKLLYGT 118
GR SP + YLHI+ FS+ IFC+PPS VIPLHNHP MTV SKLL+GT
Sbjct: 100 VTGR----------SPLVTYLHIYACHRFSICIFCLPPSGVIPLHNHPEMTVFSKLLFGT 149
Query: 119 LHAESYDWIDVTDPTDQLQELSVRPARLVRDREMSAP-ETTILYPNRGGNIHTFRAITPC 177
+H +SYDW+ P R A++ D + +AP +T+ILYP GGN+H F A T C
Sbjct: 150 MHIKSYDWV----PDSPQPSSDTRLAKVKVDSDFTAPCDTSILYPADGGNMHCFTAKTAC 205
Query: 178 ALFDVLSPPYSAEKGRDCSY-----FRKSSVRETPPVVLPGEINSAEVIWLEELEDHQPP 232
A+ DV+ PPYS GR C+Y F SV V+ E WL+E E+ P
Sbjct: 206 AVLDVIGPPYSDPAGRHCTYYFDYPFSSFSVDG----VVVAEEEKEGYAWLKEREEK--P 259
Query: 233 EGFVVARGLYKGPVIR 248
E V +Y GP I+
Sbjct: 260 EDLTVTALMYSGPTIK 275
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,995,543
Number of extensions: 254271
Number of successful extensions: 559
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 5
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)