BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0117200 Os04g0117200|AK107523
         (414 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19980.1  | chr1:6933162-6934643 FORWARD LENGTH=343             93   3e-19

>AT1G19980.1 | chr1:6933162-6934643 FORWARD LENGTH=343
          Length = 342

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 172/398 (43%), Gaps = 72/398 (18%)

Query: 21  SGKGAQAE-WLRIYDGIVAMLRKTQAQVEELVAERDHLAAFVKIQHDFMVSRVGRLQSSL 79
           SG  ++ E W  I+  +V +L+  Q Q+E L+ ++  L + +K  ++  +S V   +  L
Sbjct: 7   SGDSSERENWETIFKSLVKILQTKQDQLESLLKDKKILESEIKTNNENWLSDVRNYEDQL 66

Query: 80  QQARKADAIRKRY---EAANMEILIGDKEREARSYQKIAELTENDLEDFRTSIAALAAEN 136
               K     K +   E     +L G KE++        E + ++L+DF+     L    
Sbjct: 67  SLMMKEIETTKMFQLLETYKSNLLCGLKEKDRSLCNLKLEHSLDELKDFKAWFDFLTLNT 126

Query: 137 YELKEKLKEVERHAELAENTVDHHIHSPRDLRAELKKLKHAYKTLSSEKEKEVSALRAEN 196
                    VE  +  +E T      + + L A+++KLK  Y+ L+SEK+ EVS L  EN
Sbjct: 127 --------NVESVSGNSEGT------AIKSLEAKIRKLKLEYEKLASEKKCEVSDLLREN 172

Query: 197 DFVWNQLRTMENDYTDLLKKKKIEAAQATEAAQKLQKNLEELQDQN--KGNEIGRLQAEA 254
            F WNQ + +E+++TD LK+K  E  QA      L    E+LQ  N  K   I RL+A  
Sbjct: 173 GFAWNQFKCIESEFTDKLKRKDDEIVQANTKISSLISYQEQLQSSNQEKDETISRLKA-- 230

Query: 255 VDAKMNISILEDKLQEMLSLVKEKDLEIEQLKHGQPMTSQINKKDINQKNRKCRSQDPPS 314
                       K+ EM +   +KD EI +L            +D+ +  +K R    P 
Sbjct: 231 ------------KMAEMETNSTKKDEEISKLT-----------RDL-ESAKKSRGF-TPV 265

Query: 315 RDKSTNLQATPPGRKVKISRQHASSSKQKQVQSRNNSRRQKLEGDKSEVGEKRKRALPSS 374
             + T L+    G  V     H S+ K K   S  N +  K          KRKRA    
Sbjct: 266 LTRCTKLEKRSNGNTVG---SHISTKKDKSAASTTNEKVSK--------SSKRKRA---- 310

Query: 375 SGLQRCSARQQAKSSASPVVQPLLFSPIFRVPKVKTPT 412
                   +     S S V  P LF+  FR+PK+K+P+
Sbjct: 311 --------KNMTPVSVSEV--PKLFTSTFRLPKLKSPS 338



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.125    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,920,559
Number of extensions: 325564
Number of successful extensions: 2311
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2365
Number of HSP's successfully gapped: 20
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)