BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0111500 Os04g0111500|AK102051
         (398 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50380.1  | chr5:20516382-20518433 REVERSE LENGTH=684           63   3e-10

>AT5G50380.1 | chr5:20516382-20518433 REVERSE LENGTH=684
          Length = 683

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 159/400 (39%), Gaps = 60/400 (15%)

Query: 37  MDFSKCEDLGKDYLIMLKISTKVLQSMFCQFCGQNQPFFQTKKDY-FQQFAKSPIKKMLE 95
           +D+   ++  K ++  +KI+ +VL     + C +     ++ K+  F +  KS + ++L 
Sbjct: 294 IDWKSMDEKMKKWIQAVKITVRVLLVGEKKICDEIFSSSESSKEVCFNETTKSCVMQLLN 353

Query: 96  IALSFSESNWSEEHIRPMLLAYDTLQDVLPTIRELSPDEPDEFFT-----SILHNMRNAS 150
              + +    S E +  +L  YD L +VL T+  +  D     F       +L  + +A+
Sbjct: 354 FGEAVAIGRRSSEKLFRILDMYDALANVLQTLEVMVTD----CFVCNETKGVLEALGDAA 409

Query: 151 RGIIDNMKRFIQHKV--QTWDNIAIHPTTCFLINAIKIFNVHKNLLHSTLVPGD-----G 203
           RG     +  ++++   +   N  +HP   +++N +K+   +   L+S L   +     G
Sbjct: 410 RGTFVEFENNVRNETSKRPTTNGEVHPMIRYVMNYMKLIVDYAVTLNSLLESNESSGVSG 469

Query: 204 QDS------FGYLINGVIACWKLKIKELSMLDDPDKNDSDGXXXXXXXXXXXXXXXXXRD 257
            DS          I G+I   +      S L+D  K   DG                   
Sbjct: 470 DDSTEEMSPLAKRILGLITSLE------SNLEDKSKLYEDGGLQHVFMMNNIYYIVQKVK 523

Query: 258 TNGLLDGLLVHRELIEECKNEFQSDMENYTSRYMTASWGPAISCL--------------- 302
            + L  G L+  + + + + + +     Y + Y+ ASW   +S L               
Sbjct: 524 DSEL--GKLLGDDWVRKRRGQIR----QYATGYLRASWSRVLSALRDESMGGSSSGSPSY 577

Query: 303 ----NNHTGGSIRQSMNAFISKFEGTFDCQKVLKVPDSELKQKLRDDIENLIFPAYEISF 358
               NN +  ++++    F + FE  +  Q   KVPD +L+++LR  I   + PAY   F
Sbjct: 578 GQRSNNSSKMALKERFRGFNASFEELYRLQTAWKVPDPQLREELRISISEKVIPAYRAFF 637

Query: 359 EELQRNSNSGLFCSCFPRNLTCSMYTPEILRRSVQGLFEG 398
              +     G     + +      YTP+ L   +  LFEG
Sbjct: 638 GRNRSQLEGGRHAGKYIK------YTPDDLESYLPDLFEG 671



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,740,357
Number of extensions: 361934
Number of successful extensions: 883
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 2
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)