BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0105300 Os04g0105300|AK060144
(287 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46890.1 | chr2:19266879-19268134 REVERSE LENGTH=323 316 8e-87
AT1G18180.1 | chr1:6255903-6257737 FORWARD LENGTH=306 73 2e-13
AT1G73650.3 | chr1:27688409-27690165 REVERSE LENGTH=303 67 1e-11
>AT2G46890.1 | chr2:19266879-19268134 REVERSE LENGTH=323
Length = 322
Score = 316 bits (810), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 137/202 (67%), Positives = 170/202 (84%)
Query: 64 LTWVWSARLTHNYLRREGWQWGKREDWRFAEMRGQYGRAWWWMSFFAVYLSQQVFLIGIC 123
LTW+WS RLTHNY RRE W+WG REDWRF ++R QYG+ WWW+SFF+VY+SQQ+FLIGIC
Sbjct: 111 LTWIWSIRLTHNYFRRENWEWGAREDWRFNDLRKQYGKHWWWLSFFSVYVSQQIFLIGIC 170
Query: 124 LPMYAIHSTTQPWGAWDVVATMACLAGIVIAHFADTQLHRFVTTNEKLKKVGEPTVLTME 183
LP+Y IHS +P WD +++ CL GIV+A+FADTQLH FVT N+KLK+ G+P + ++
Sbjct: 171 LPLYVIHSIDEPLNIWDFISSAICLTGIVMAYFADTQLHEFVTGNQKLKEQGKPKIPNLD 230
Query: 184 AGLWRYSRHPNYFGEQLWWWGLYLFAWNIGQPWMVVGPLVNSLCLGYVTVLVERRMVKQE 243
+GLWRYSRHPNY GEQLWWWGL +FAWN+GQ W ++G LVN+LCL YVT+LVERRMVKQ+
Sbjct: 231 SGLWRYSRHPNYLGEQLWWWGLVIFAWNLGQGWTLIGALVNTLCLVYVTILVERRMVKQQ 290
Query: 244 HRAEAYKLYQKRTSVWIPWFRK 265
+RAEAY+ YQK TSVWIPWF+
Sbjct: 291 YRAEAYRAYQKTTSVWIPWFKS 312
>AT1G18180.1 | chr1:6255903-6257737 FORWARD LENGTH=306
Length = 305
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 23/201 (11%)
Query: 64 LTWVWSARLTHNYLRREGWQWGKREDWRFAEMRGQYGRAWWWMSFFAVYLSQQVFLIGIC 123
L VW RL L R QWG ED RF +MR G+ ++ Q V++ +
Sbjct: 69 LVVVWGLRLGLFLLMRI-LQWG--EDRRFDDMRENIGK------LVVFWIFQAVWVWTVS 119
Query: 124 LPMYAIHSTT--QPWGAWDVVATMACLAGIVIAHFADTQLHRFVTTNEKLKKVGEPTVLT 181
LP+ ++++ + + DV+ +AG +I AD Q F KK E
Sbjct: 120 LPVTFVNASNGGRLFQPADVIGWTMWVAGFLIEATADQQKLSF-------KKCPENKGKW 172
Query: 182 MEAGLWRYSRHPNYFGEQLWWWGLYLFAWNI--GQPWMV-VGPLVNSLCLGYVT--VLVE 236
+ G+W+YSRHPNYFGE L WWGLY+ + + G ++V +GP+ +L L +V+ L+E
Sbjct: 173 CDVGVWKYSRHPNYFGEMLLWWGLYVASLPVLKGLEYLVIIGPVFLTLLLLFVSGIPLLE 232
Query: 237 RRMVKQEHRAEAYKLYQKRTS 257
K+ AY+ Y+K TS
Sbjct: 233 ESADKKYGNLGAYRHYKKTTS 253
>AT1G73650.3 | chr1:27688409-27690165 REVERSE LENGTH=303
Length = 302
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 23/201 (11%)
Query: 64 LTWVWSARLTHNYLRREGWQWGKREDWRFAEMRGQYGRAWWWMSFFAVYLSQQVFLIGIC 123
L VW RL L R QWG ED RF E RG R + Q V++ +
Sbjct: 69 LVVVWGLRLGIFLLMRI-LQWG--EDRRFDEQRGNIVR------LIIFWTLQAVWVWTVS 119
Query: 124 LPMYAIHSTTQ--PWGAWDVVATMACLAGIVIAHFADTQLHRFVTTNEKLKKVGEPTVLT 181
LP+ ++++ DV+ + G +I AD Q F + E K
Sbjct: 120 LPLTLVNASDGGGSLKPADVIGWTMWVFGFLIEAAADQQKLSFKNSPENRGK-------W 172
Query: 182 MEAGLWRYSRHPNYFGEQLWWWGLYLFAWNI--GQPWMVV-GPLVNSLCLGYVT--VLVE 236
+ G+W+YSRHPNYFGE L WWG+++ A + G ++V+ GPL +L L +V+ L+E
Sbjct: 173 CDVGVWKYSRHPNYFGEMLLWWGIFVAASPVLEGAEYLVIFGPLFLTLLLLFVSGIPLLE 232
Query: 237 RRMVKQEHRAEAYKLYQKRTS 257
K+ + AY+ Y+K TS
Sbjct: 233 ASADKKHGNSGAYRSYKKTTS 253
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.134 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,555,949
Number of extensions: 219052
Number of successful extensions: 451
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 3
Length of query: 287
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 189
Effective length of database: 8,419,801
Effective search space: 1591342389
Effective search space used: 1591342389
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)