BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0103100 Os04g0103100|AK070873
(381 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395 270 9e-73
AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352 145 4e-35
AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493 94 1e-19
AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526 94 2e-19
>AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395
Length = 394
Score = 270 bits (690), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 175/256 (68%), Gaps = 2/256 (0%)
Query: 126 KLLIVVTPTRARPSQAYYLTRMAHTLRLLHDSPLLWIVVQAGNPTPEAAAALRRTAVLHR 185
KLLIVVTPT R QAYYL R+A TLRL+ +SP+LWIVV+ + E + LR+T V++R
Sbjct: 141 KLLIVVTPTYNRAMQAYYLNRVAQTLRLV-ESPVLWIVVEGNVASFETSEILRKTGVMYR 199
Query: 186 YVGCCHNINASAPDFRPHQINAALDIVDNHRLDGVLYFADEEGVYSLHLFHHLRQIRRFA 245
++ C N+ S D HQ N AL+ ++ H+LDG++YFAD++ +YSL LF LRQI RF
Sbjct: 200 HLVCKRNM-TSIKDRGVHQRNTALEHIELHKLDGIVYFADDDNIYSLELFQSLRQISRFG 258
Query: 246 TWPVPEISQHTNEVVLQGPVCKQGQVVGWHTTHDGNKLRRFHLAMSGFAFNSTMLWDPKL 305
TWPV ++Q N+ +L+GPVC QV+GWHT +LRRFH+ MSGFAFNST+LWDPK
Sbjct: 259 TWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKR 318
Query: 306 RSHLAWNSIRHPEMVKESLQGSAFVEQLVEDESQMEGIPADCSQIMNWHVPFGSESVVYP 365
+ R + VKE Q ++F+EQ+V DES+MEG+P CS I+NWH+ + V YP
Sbjct: 319 WRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEMEGVPPACSSILNWHLHLDALDVPYP 378
Query: 366 KGWRVATDLDVIIPLK 381
+GW + +L +I +K
Sbjct: 379 QGWAIQKNLQALITMK 394
>AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352
Length = 351
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 127 LLIVVTPTRARPS-QAYYLTRMAHTLRLLHDSPLLWIVVQAGNPTPEAAAA--LRRTAVL 183
L+IVVTP + + L RMA+TLRL+ PLLWIVV+ + E +++ LR+T ++
Sbjct: 116 LVIVVTPIITKDRYKNVLLRRMANTLRLV-PPPLLWIVVEKHSDGEEKSSSTMLRKTGIM 174
Query: 184 HRYVGCCHNINASAPDFRPHQINAALDIVDNHRLDGVLYFADEEGVYSLHLFHHLRQIRR 243
+R + + + + HQ N AL +++H+L G+++FA +Y L F +R I
Sbjct: 175 YRRIVFKEDFTSLESEL-DHQRNLALRHIEHHKLSGIVHFAGLNNIYDLDFFVKIRDIEV 233
Query: 244 FATWPVPEISQHTNEVVLQGPVCKQGQVVGWHTTHDGNKLR-RFHLAMSGFAFNSTMLWD 302
F TWP+ +S + VV++GPVC+ QV+GWH N+ + + +S FAFNS++LWD
Sbjct: 234 FGTWPMALLSANRKRVVVEGPVCESSQVLGWHLRKINNETETKPPIHISSFAFNSSILWD 293
Query: 303 PKLRSHLAWNSIRHPEMVKESLQGS-AFVEQLV-EDESQMEGIPA-DCSQIMNWHVPF 357
P+ W P V+ + Q S +V+Q+V ED+++++G+PA DCS+IM W + F
Sbjct: 294 PE-----RWG---RPSSVEGTKQDSIKYVKQVVLEDDTKLKGLPAQDCSKIMLWRLKF 343
>AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493
Length = 492
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 146/328 (44%), Gaps = 48/328 (14%)
Query: 95 PIPNPNSHHRHRDPFPILQXXXXXXXXXXXXKLLIVVTPTRARPSQAYYLTRMAHTLRLL 154
P PNP R +Q + +IVVTPT R QA +LT + H+L L+
Sbjct: 121 PHPNPIEVLRAHQLLVRVQKEQKSMYGVRSPRTVIVVTPTYVRTFQALHLTGVMHSLMLV 180
Query: 155 -HDSPLLWIVVQAGNPTPEAAAALRRTAVLHRYVGCCHNINASAPDFRPHQINA---ALD 210
+D L+WIVV+AG T E A+ + ++ + ++G + + D + AL
Sbjct: 181 PYD--LVWIVVEAGGITNETASFIAKSGLKTIHLGFDQKMPNTWEDRHKLETKMRLHALR 238
Query: 211 IVDNHRLDGVLYFADEEGVYSLHLFHHLRQIRRFATWPVPEISQHTN------------- 257
+V +LDG++ FAD+ ++S+ LF ++ ++ F V ++ N
Sbjct: 239 VVREKKLDGIVMFADDSNMHSMELFDEIQTVKWFGALSVGILAHSGNADELSSILKNEQG 298
Query: 258 ------EVVLQGPVCKQGQ-VVGWHTTHDGNKLRRF-------------HLAMSGFAFNS 297
+ +QGP C + +VGWH + ++ + SGF NS
Sbjct: 299 KNKEKPSMPIQGPSCNSSEKLVGWHIFNTQPYAKKTAVYIDEKAPVMPSKMEWSGFVLNS 358
Query: 298 TMLWDPKLRSHLAWNSIRHPEMVKESLQGSAFVE---QLVEDESQMEGIPADCSQIMNWH 354
+LW L AW ++ ++ + G A +E LV+D S +E + + +++ W
Sbjct: 359 RLLWKESLDDKPAW--VKDLSLLDD---GYAEIESPLSLVKDPSMVEPLGSCGRRVLLWW 413
Query: 355 VPFGSES-VVYPKGWRVATDLDVIIPLK 381
+ + + +P GW + + L++ +P K
Sbjct: 414 LRVEARADSKFPPGWIIKSPLEITVPSK 441
>AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526
Length = 525
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 146/334 (43%), Gaps = 58/334 (17%)
Query: 95 PIPNPNSHHRHRDPFPILQXXXXXXXXXXXXKLLIVVTPTRARPSQAYYLTRMAHTLRLL 154
P PNP + +Q K++I VTPT R QA +LT + H+L L+
Sbjct: 129 PHPNPVEVMKAHQIIGRVQKEQKMIFGMKSSKMVIAVTPTYVRTFQALHLTGVMHSLMLV 188
Query: 155 -HDSPLLWIVVQAGNPTPEAAAALRRTAVLHRYVGCCHNINASAPDFRPHQINA---ALD 210
+D L+WIVV+AG T E + ++ + +VG + + D ++ AL
Sbjct: 189 PYD--LVWIVVEAGGATNETGLIIAKSGLRTIHVGIDQRMPNTWEDRSKLEVFMRLQALR 246
Query: 211 IVDNHRLDGVLYFADEEGVYSLHLFHHLRQIRRFATWPVPEISQHTN--EVVL------- 261
+V +LDG++ FAD+ ++S+ LF ++ ++ F T V ++ N E+VL
Sbjct: 247 VVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGTVSVGILAHSGNAEEMVLSMEKRKE 306
Query: 262 --------------QGPVCKQ-GQVVGWHTTH-------------DGNKLRRFHLAMSGF 293
QGP C Q++GWH + D + L SGF
Sbjct: 307 MEKEEEEESSSLPVQGPACNSTDQLIGWHIFNTLPYAGKSAVYIDDVAAVLPQKLEWSGF 366
Query: 294 AFNSTMLWDPKLRSHLAWNSIRHPEMVKE--SLQGSAFVE---QLVEDESQMEGIPADCS 348
NS +LW+ + PE VK+ SL + VE L++D S +E + +
Sbjct: 367 VLNSRLLWE---------EAENKPEWVKDFGSLNENEGVESPLSLLKDPSMVEPLGSCGR 417
Query: 349 QIMNWHVPFGSES-VVYPKGWRVATDLDVIIPLK 381
Q++ W + + + +P GW + L++ + K
Sbjct: 418 QVLLWWLRVEARADSKFPPGWIIDPPLEITVAAK 451
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,242,684
Number of extensions: 274903
Number of successful extensions: 546
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 281
Effective length of database: 8,364,969
Effective search space: 2350556289
Effective search space used: 2350556289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)