BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0102700 Os04g0102700|AK101740
(608 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64440.1 | chr5:25766229-25770260 FORWARD LENGTH=608 719 0.0
AT3G25660.1 | chr3:9339640-9342044 REVERSE LENGTH=538 137 2e-32
AT5G09420.1 | chr5:2928316-2931750 FORWARD LENGTH=604 90 3e-18
AT1G08980.1 | chr1:2884455-2886430 FORWARD LENGTH=426 89 5e-18
AT5G07360.1 | chr5:2326925-2330011 REVERSE LENGTH=660 88 1e-17
AT3G17970.1 | chr3:6148030-6151794 FORWARD LENGTH=590 63 4e-10
>AT5G64440.1 | chr5:25766229-25770260 FORWARD LENGTH=608
Length = 607
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/607 (56%), Positives = 450/607 (74%), Gaps = 2/607 (0%)
Query: 1 MGKPPRAMTPVEEVDLSAVRYQSPSLQAPHLTGFSLRAFVWLMESPLFGRLLTSVLKSQN 60
MGK + M EVDLS V+Y++ +++APHLTG S + FV L+E+PL G L+ LK N
Sbjct: 1 MGKY-QVMKRASEVDLSTVKYKAETMKAPHLTGLSFKLFVNLLEAPLIGSLIVDYLKKDN 59
Query: 61 NITRMLQDTVIPERXXXXXXXXXXXXXXGVLLLGDDRDPVDRVEEALHCLPPYDPSLRWP 120
+T++ ++TVIPE V+++G+D P+DR+E AL CLP YDPS
Sbjct: 60 GMTKIFRNTVIPEEPMFRPEFPSQEPEHDVVIVGEDESPIDRLETALKCLPQYDPSRSLH 119
Query: 121 AGDKPPFLYWKIRDFAHAYRSGITTPSVVAEHIIAGVEEWSNKKPPMPMLVYFNADDLRK 180
A F YWKIRD+A+AYRS +TTP VA+ II+ +EE+ KPP P L+ F+A+++ K
Sbjct: 120 ADPVSSFRYWKIRDYAYAYRSKLTTPLQVAKRIISIIEEFGYDKPPTPFLIRFDANEVIK 179
Query: 181 QAEASTKRFQQGNPISILDGIFIAIKDDIDCFPYPSKGATTFFDKIRSVEKDAVCVARLR 240
QAEAST+RF+QGNPIS+LDGIF+ IKDDIDC P+P+ G TT+ + RSVEKD+ V++LR
Sbjct: 180 QAEASTRRFEQGNPISVLDGIFVTIKDDIDCLPHPTNGGTTWLHEDRSVEKDSAVVSKLR 239
Query: 241 KCGVLFIGKANMHELGLGVTGNNPNYGTARNPHSIDRYTGGSSSGPAALVSSGLCSAAIG 300
CG + +GKANMHELG+G TGNN NYGT RNPH RYTGGSSSG AA+V++GLCSAA+G
Sbjct: 240 SCGAILLGKANMHELGMGTTGNNSNYGTTRNPHDPKRYTGGSSSGSAAIVAAGLCSAALG 299
Query: 301 TDGGGSVRIPSSLCGIIGLKTTYGRTDMTGALCDCGTVEVASPLAASVEDALLVYSAIAG 360
TDGGGSVRIPS+LCGI GLKTTYGRTDMTG+LC+ GTVE+ PLA+S+EDA LVY+AI G
Sbjct: 300 TDGGGSVRIPSALCGITGLKTTYGRTDMTGSLCEGGTVEIIGPLASSLEDAFLVYAAILG 359
Query: 361 SRPMDKLTLRPSPLCVPNLVSPDNNNILGSVKIGKYTEWFHDVSDRDISNTCEDALNLLC 420
S D+ L+PSP C P L+S + +N +GS+++GKYT+WF+DVS DIS+ CED L LL
Sbjct: 360 SSSADRYNLKPSPPCFPKLLSHNGSNAIGSLRLGKYTKWFNDVSSSDISDKCEDILKLLS 419
Query: 421 SSFGCQXXXXXXXXXXXMRTAHVVSIGTESFCDLNPHYRAGKRTEFTLDTRTSLALFGSF 480
++ GC+ MR AHV+SIG+ + L P+ AGK ++ + DTRTS A+F SF
Sbjct: 420 NNHGCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRTSFAIFRSF 479
Query: 481 TSTDYVASQRIRRRIMYYHNEAFKKVDVIATPTTGITAPEIPQSSLKLGESNYVVSAYLM 540
+++DY+A+Q +RRR+M YH FK VDVI TPTTG+TAP IP +LK GE+N V+ LM
Sbjct: 480 SASDYIAAQCLRRRLMEYHLNIFKDVDVIVTPTTGMTAPVIPPDALKNGETNIQVTTDLM 539
Query: 541 RFVIAGNLLGLPAITVPVGHDKQGLPIGLQLIGRPWGEASLLRVASAIEELCLQKRKRPS 600
RFV+A NLLG PAI+VPVG+DK+GLPIGLQ++GRPW EA++L +A+A+EEL K+P+
Sbjct: 540 RFVLAANLLGFPAISVPVGYDKEGLPIGLQIMGRPWAEATVLGLAAAVEELA-PVTKKPA 598
Query: 601 AFHDILN 607
F+DILN
Sbjct: 599 IFYDILN 605
>AT3G25660.1 | chr3:9339640-9342044 REVERSE LENGTH=538
Length = 537
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 203/448 (45%), Gaps = 43/448 (9%)
Query: 175 ADDLRKQAEASTKRFQQGNPISILDGIFIAIKDDIDCFPYPSKGATTFFDKIRSVEKDAV 234
++++ K A+ +R +G + L G+ I +KD+I PS A+ + R DA
Sbjct: 85 SENVLKDAQEIDQRIAKGEELGPLAGVLIGVKDNICTQGMPSTAASRILEHYRP-PFDAT 143
Query: 235 CVARLRKCGVLFIGKANMHELGLGVTGNNPNYGTARNPHSIDRYTGGSSSGPAALVSSGL 294
V ++++ G + +GK NM E G+G T + NP + R GGSS G AA V++
Sbjct: 144 AVKKIKELGGIVVGKTNMDEFGMGSTTEASAFQVTANPWDLSRVPGGSSGGSAAAVAARQ 203
Query: 295 CSAAIGTDGGGSVRIPSSLCGIIGLKTTYGRTDMTGALCDCGTVEVASPLAASVEDALLV 354
C ++G+D GGSVR P+S CG++GLK TYGR G + +++V ++V DA ++
Sbjct: 204 CMVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCFGSTVADAGML 263
Query: 355 YSAIAGSRPMDKLTLRPS-PLCVPNLVSPDN--NNILGSVKIGKYTEWFHDVSDRDISNT 411
AI+G D + + P +S D+ + L VK+G E D D + +
Sbjct: 264 LHAISGYDRFDSTSSKQDVPEFQSQFLSVDHFESKPLNGVKVGIIRETLEDGVDSGVRSA 323
Query: 412 CEDALNLLCSSFGCQXXXXXXXXXXXMRTAHV----------------VSIGTESFC-DL 454
++A + L + GC A+ V G + +L
Sbjct: 324 TQEAASHL-EALGCILTEVSLPSFSLGLPAYYVIASSESSSNLSRYDGVRYGNQVMAEEL 382
Query: 455 NPHYRAGKRTEFTLDTRTSL-----ALFGSFTSTDYVASQRIRRRIMYYHNEAFKKVDVI 509
N Y + F + + + AL + Y +Q++R I A ++ D++
Sbjct: 383 NKLYECSRGEGFGGEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIRKDFKAALEQNDIL 442
Query: 510 ATPTTGITAPEIPQSSLKLGESN----YVVSAYLMRFVIAGNLLGLPAITVPVGHDK--- 562
+P P ++ K+GE + + +M + NL GLPA+ +P G +
Sbjct: 443 ISPAA-------PSAAYKIGEKKDDPLAMYAGDIMTVNV--NLAGLPAMVLPCGLVEGGP 493
Query: 563 QGLPIGLQLIGRPWGEASLLRVASAIEE 590
GLP+GLQ+IG + E LL+V E+
Sbjct: 494 SGLPVGLQMIGAAFDEEKLLKVGHIFEQ 521
>AT5G09420.1 | chr5:2928316-2931750 FORWARD LENGTH=604
Length = 603
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Query: 198 LDGIFIAIKDDIDCFPYPSK-GATTFFDKIRSVEKDAVCVARLRKCGVLFIGKANMHELG 256
L G+ +I D D Y + G + + EK AV V L K G +GK M ELG
Sbjct: 71 LSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGATCVGKTIMDELG 130
Query: 257 LGVTGNNPNYGTARNPHSIDRYTGGSSSGPAALVSSGLCSAAIGTDGGGSVRIPSSLCGI 316
G+ G N +YGT NP D GG SSG A V + L ++G D G VR+P++ CGI
Sbjct: 131 FGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTTGGVRVPAAFCGI 190
Query: 317 IGLKTTYGRTDMTGALCDCGTVEVASPLAA------SVEDALLVYSAIAGSR 362
+G + + G G L + ++E A+ V ALL SA+ R
Sbjct: 191 LGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAVTHRR 242
>AT1G08980.1 | chr1:2884455-2886430 FORWARD LENGTH=426
Length = 425
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 198 LDGIFIAIKDDIDCFPYPSKGATTFF---DKIRS---VEKDAVCVARLRKCGVLFIGKAN 251
L G+ AIKD D +G T F D +R+ A V+ L + G +G
Sbjct: 28 LQGLTFAIKDIFDV-----EGRVTGFGNPDWLRTHSAATSTAPVVSSLLEAGATALGITI 82
Query: 252 MHELGLGVTGNNPNYGTARNPHSIDRYTGGSSSGPAALVSSGLCSAAIGTDGGGSVRIPS 311
M E+ + G N +YGT RNP + DR GGSSSG A V++ L +IGTD GGSVR+P+
Sbjct: 83 MDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVAARLVDFSIGTDTGGSVRVPA 142
Query: 312 SLCGIIGLKTTYGRTDMTG 330
S CGI G + ++G G
Sbjct: 143 SYCGIFGFRPSHGAVSTVG 161
>AT5G07360.1 | chr5:2326925-2330011 REVERSE LENGTH=660
Length = 659
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 170 LVYFNADDLRKQAEASTKRFQQGNPISILDGIFIAIKDDIDCFPYPSK-GATTFFDKIRS 228
+V + + KQA+ + QG + L GI +KD + Y + G+T+F D+
Sbjct: 240 VVTYTEELAYKQAKEADDLLSQGTYLGPLHGIPYGLKDIVAVPGYKTTWGSTSFKDQFLD 299
Query: 229 VEKDAVCVARLRKCGVLFIGKANMHELGLGVTGNNPNY--GTARNPHSIDRYTGGSSSGP 286
+E A RL+ G + + K L G + + G RNP +I+ ++ GSS+GP
Sbjct: 300 IE--AWVYKRLKASGAVLVAK-----LVTGSMAYDDIWFGGRTRNPWNIEEFSTGSSAGP 352
Query: 287 AALVSSGLCSAAIGTDGGGSVRIPSSLCGIIGLKTTYGRTDMTGALCDCGTVEVASPLAA 346
AA S+G+ AIG++ GS+ P++ CGI L+ T+G TG + +++ P
Sbjct: 353 AASTSAGMVPFAIGSETAGSMTYPAARCGITALRPTFGSVGRTGVMSISESLDKLGPFCR 412
Query: 347 SVEDALLVYSAIAGSRPMD 365
+ D ++ AI G P D
Sbjct: 413 TAADCAVILDAIKGKDPDD 431
>AT3G17970.1 | chr3:6148030-6151794 FORWARD LENGTH=590
Length = 589
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 236 VARLRKCGVLFIGKANMHELGLGVTGNNPNYGTARNPHSIDRYTGGSSSGPAALVSSGLC 295
V+ L + G +GK + E ++G N +Y + NP + R GG+ SG A V++
Sbjct: 97 VSTLVEGGATCVGKTVVDEFAFSISGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAV 156
Query: 296 SAAIGTDGGGSVRIPSSLCGIIGLKTTYGRTDMTGALCDCGTVEVASPL 344
A+G D G VR+P+ CG++G K++Y GA+ + G + V+S L
Sbjct: 157 DFALGIDTVGGVRVPAGYCGVLGFKSSY------GAISNTGIIPVSSSL 199
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,624,826
Number of extensions: 580860
Number of successful extensions: 1150
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 6
Length of query: 608
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 504
Effective length of database: 8,255,305
Effective search space: 4160673720
Effective search space used: 4160673720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)