BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0859800 Os03g0859800|AK071971
(302 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04250.1 | chr5:1176397-1178492 FORWARD LENGTH=346 283 1e-76
AT5G03330.1 | chr5:807728-809608 FORWARD LENGTH=357 265 2e-71
AT3G02070.1 | chr3:361368-363132 FORWARD LENGTH=220 239 1e-63
AT3G22260.2 | chr3:7871489-7873393 FORWARD LENGTH=246 211 5e-55
AT2G39320.1 | chr2:16417592-16418517 REVERSE LENGTH=190 97 1e-20
AT5G67170.1 | chr5:26799851-26801763 FORWARD LENGTH=376 55 4e-08
AT2G27350.5 | chr2:11699780-11702363 REVERSE LENGTH=507 53 2e-07
>AT5G04250.1 | chr5:1176397-1178492 FORWARD LENGTH=346
Length = 345
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 129/185 (69%), Positives = 153/185 (82%), Gaps = 1/185 (0%)
Query: 119 QVGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRAL 178
+VGKRL+ MIPI HVPK NG++PS DE SDH+RL RL+LY L E K+EGDGNCQFR+L
Sbjct: 161 EVGKRLNQMIPIAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSL 220
Query: 179 SDQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAA 238
SDQ YR+ EHH FVR+Q+V QL EIY GYVPM Y +YLK M +NGEWGDHVTLQAAA
Sbjct: 221 SDQLYRSPEHHNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAA 280
Query: 239 DSYGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMEN-KRK 297
D +GV++F++TSF+DTCYIEILP QKS R+ICLSFWAEVHYNSIYPEGELP+ E K+K
Sbjct: 281 DLFGVRMFVITSFKDTCYIEILPHFQKSNRLICLSFWAEVHYNSIYPEGELPIPEGKKKK 340
Query: 298 RWWHF 302
++W F
Sbjct: 341 KYWVF 345
>AT5G03330.1 | chr5:807728-809608 FORWARD LENGTH=357
Length = 356
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/233 (54%), Positives = 168/233 (72%), Gaps = 9/233 (3%)
Query: 71 KEDEQDDAXXXXXXFSSCSTPADYTNTNNHNAHDCLIEFVDDFSALDGQVGKRLHDMIPI 130
+++QD SCS+P+D + + + D DG+ G+RL+ M+PI
Sbjct: 130 NDNDQDGRSDDSVNVFSCSSPSD--------TDEYVYSWESDQCDADGEFGRRLNQMVPI 181
Query: 131 PHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRALSDQFYRTTEHHR 190
P++PK NG+IP +EA SDH+RL +RLE++D E+KV GDGNCQFRAL+DQ Y+T + H+
Sbjct: 182 PYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRALADQLYKTADRHK 241
Query: 191 FVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAADSYGVKIFILTS 250
VR+QIVKQL+S P+ Y GYVPMD+ +YL+KM ++GEWGDHVTLQAAAD+Y VKI +LTS
Sbjct: 242 HVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAADAYRVKIVVLTS 301
Query: 251 FRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMENKRKR-WWHF 302
F+DTCYIEILP Q+S+ VI LSFWAEVHYN+IY + E +RKR WW F
Sbjct: 302 FKDTCYIEILPTSQESKGVIFLSFWAEVHYNAIYLNRDTSETELQRKRKWWRF 354
>AT3G02070.1 | chr3:361368-363132 FORWARD LENGTH=220
Length = 219
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 148/201 (73%), Gaps = 2/201 (0%)
Query: 104 DCLIEFV--DDFSALDGQVGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYD 161
D +I F+ +++S LDG VG+RL ++ P+PHVP+ N IP++++A DHQRLL RL +Y
Sbjct: 19 DRMIAFMLSEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQRLNVYG 78
Query: 162 LAELKVEGDGNCQFRALSDQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKK 221
L ELKV GDGNCQFRALSDQ YR+ E+H+ VR+++VKQL+ +Y YVPM Y+ Y KK
Sbjct: 79 LCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYKRYYKK 138
Query: 222 MIKNGEWGDHVTLQAAADSYGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYN 281
M K GEWGDH+TLQAAAD + KI +LTSFRDTC+IEI+P Q + V+ LSFW+EVHYN
Sbjct: 139 MGKFGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFWSEVHYN 198
Query: 282 SIYPEGELPVMENKRKRWWHF 302
S+Y PV +++ W F
Sbjct: 199 SLYDIQAAPVQHKPKRKHWLF 219
>AT3G22260.2 | chr3:7871489-7873393 FORWARD LENGTH=246
Length = 245
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 117 DGQVGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFR 176
+G++GKRL + IPH P+ N +IP +++A DH+ L RL Y LAEL++EGDGNCQFR
Sbjct: 56 EGKLGKRLSHLDSIPHTPRVNREIPDINDATLDHELLSGRLATYGLAELQMEGDGNCQFR 115
Query: 177 ALSDQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQA 236
AL+DQ +R ++H+ VR+ +VKQL+ ++Y YVPM YR Y +KM K+GEWGDHVTLQA
Sbjct: 116 ALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTLQA 175
Query: 237 AADSYGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEG-----ELPV 291
AAD + KI ++TSFRD YIEILP + R LSFW+EVHYNS+Y G ++P
Sbjct: 176 AADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWSEVHYNSLYANGVLALPDVPT 235
Query: 292 MENKRKRW 299
+ +RK W
Sbjct: 236 RKPRRKHW 243
>AT2G39320.1 | chr2:16417592-16418517 REVERSE LENGTH=190
Length = 189
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 20/123 (16%)
Query: 167 VEGDGNCQFRALSDQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNG 226
++ DGNCQFRAL+DQ Y+ ++ H VRQ+IVKQ S + N
Sbjct: 2 MKSDGNCQFRALADQLYQNSDCHELVRQEIVKQNMS-------------------LSTNS 42
Query: 227 EWGDHVTLQAAADSYGVKIFILTSFRDTCYIEILPVVQKS-ERVICLSFWAEVHYNSIYP 285
+WGD VTL+ AAD Y VKI ++TS + ++E LP QK ++VI +S+ A +H+NSIY
Sbjct: 43 QWGDEVTLRVAADVYQVKIILITSIKLIPFMEFLPKSQKEPDKVIHMSYLAGIHFNSIYK 102
Query: 286 EGE 288
+ +
Sbjct: 103 KNK 105
>AT5G67170.1 | chr5:26799851-26801763 FORWARD LENGTH=376
Length = 375
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 149 DHQRLLHRLELYDLAELKVEGDGNCQFRALSDQFYRTTEHHRFVRQQIVKQLESYPEIYA 208
D + +L+ L ++V DGNC FRA++DQ + H R IV + E++
Sbjct: 24 DLSQFRAQLDALGLKIIQVTADGNCFFRAIADQLEGNEDEHNKYRNMIVLYIVKNREMFE 83
Query: 209 GYVPMD--YREYLKKMIKNGEWGDHVTLQAAADSYGVKIFILTSFRDTCYIEILPVVQKS 266
++ D + +Y K M +G W ++ LQAA+ I I + YI +
Sbjct: 84 PFIEDDVPFEDYCKTMDDDGTWAGNMELQAASLVTRSNICIHRNMSPRWYIRNFEDTRT- 142
Query: 267 ERVICLSFWAEVHYNSI 283
R+I LS+ HYNS+
Sbjct: 143 -RMIHLSYHDGEHYNSV 158
>AT2G27350.5 | chr2:11699780-11702363 REVERSE LENGTH=507
Length = 506
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 170 DGNCQFRALSDQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWG 229
DGNC FRA++DQ Y +E + RQ + +E + ++ ++ + YLK+ ++ +G
Sbjct: 224 DGNCLFRAVADQVYGDSEAYDLARQMCMDYMEQERDHFSQFITEGFTSYLKRKRRDKVYG 283
Query: 230 DHVTLQAAADSYGVKIFI-------LTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNS 282
++V +QA A+ Y I I + F+ + P I LS+ HYNS
Sbjct: 284 NNVEIQALAEMYNRPIHIYSYSTEPINIFQGNYSTDTPP--------IRLSYHHGNHYNS 335
Query: 283 I 283
+
Sbjct: 336 L 336
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,108,448
Number of extensions: 244187
Number of successful extensions: 503
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 7
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)