BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0857600 Os03g0857600|AK100733
(266 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34215.1 | chr4:16380203-16381192 REVERSE LENGTH=261 226 1e-59
AT3G53010.1 | chr3:19656603-19657928 REVERSE LENGTH=298 205 2e-53
>AT4G34215.1 | chr4:16380203-16381192 REVERSE LENGTH=261
Length = 260
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 151/242 (62%), Gaps = 13/242 (5%)
Query: 32 IFLLGGQSNMGGRGGATNGP------WDGVVPPECAPSPRILRLSPELRWEEAREPLHAG 85
IF+L GQSNM GRGG WD ++PPECAP+ ILRLS +LRWEEA EPLH
Sbjct: 24 IFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVD 83
Query: 86 IDVHNVLGVGPGMSFAHAL-FRAIPPSTVIGLVPCAQGGTPIANWTRGTELYEXXXXXXX 144
ID V GVGPGM+FA+A+ R S VIGLVPCA GGT I W RG+ LYE
Sbjct: 84 IDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYE-----RM 138
Query: 145 XXXXXXXXXXXXXXXXLLWYQGEADTIRREDAEVYARKMEGMVRDVRRDLALPELLVIQV 204
+LWYQGE+D + DAE Y M+ +++++R DL LP L +IQV
Sbjct: 139 VKRTEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQV 198
Query: 205 GIATGQGKFVEPVREAQKAVRLPFLKYVDAKGLPIANDYTHLTTPAQVKLGKLLAKAYLS 264
IA+G G +++ VREAQ ++L + VDAKGLP+ +D HLTT AQV+LG LA+AYLS
Sbjct: 199 AIASG-GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLAQAYLS 257
Query: 265 TL 266
Sbjct: 258 NF 259
>AT3G53010.1 | chr3:19656603-19657928 REVERSE LENGTH=298
Length = 297
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 145/239 (60%), Gaps = 12/239 (5%)
Query: 32 IFLLGGQSNMGGRGGATNGP------WDGVVPPECAPSPRILRLSPELRWEEAREPLHAG 85
IF+L GQSNM GRGG N WDGV+PPEC +P ILRL+ +L W+EA+EPLH
Sbjct: 31 IFILAGQSNMAGRGGVYNDTATNTTVWDGVIPPECRSNPSILRLTSKLEWKEAKEPLHVD 90
Query: 86 IDVHNVLGVGPGMSFAHALFRAIPPSTVIGLVPCAQGGTPIANWTRGTELYEXXXXXXXX 145
ID++ GVGPGM FA+ R + +GLVPC+ GGT ++ W +G LYE
Sbjct: 91 IDINKTNGVGPGMPFAN---RVVNRFGQVGLVPCSIGGTKLSQWQKGEFLYEETVKRAKA 147
Query: 146 XXXXXXXXXXXXXXXLLWYQGEADTIRREDAEVYARKMEGMVRDVRRDLALPELLVIQVG 205
+LWYQGE+DT+ DA VY +++ D+R DL P L +IQV
Sbjct: 148 AMASGGGGSYRA---VLWYQGESDTVDMVDASVYKKRLVKFFSDLRNDLQHPNLPIIQVA 204
Query: 206 IATGQGKFVEPVREAQKAVRLPFLKYVDAKGLPIANDYTHLTTPAQVKLGKLLAKAYLS 264
+ATG G +++ VR+AQ L + VDA+GLP+ D HLTT +QV+LG ++A+++L+
Sbjct: 205 LATGAGPYLDAVRKAQLKTDLENVYCVDARGLPLEPDGLHLTTSSQVQLGHMIAESFLA 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,918,199
Number of extensions: 197224
Number of successful extensions: 500
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)