BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0854400 Os03g0854400|Os03g0854400
         (176 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24450.1  | chr1:8664201-8665077 FORWARD LENGTH=192             77   3e-15

>AT1G24450.1 | chr1:8664201-8665077 FORWARD LENGTH=192
          Length = 191

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 30  FDAALATLQNQIAYRFHAPDLLRRAMTHASYSRENGRXXXXXXX-XXXXXXXXXXXXXXX 88
           F   LA LQ QI Y+F+  +LLRRAMTHAS+S+EN +                       
Sbjct: 44  FATDLAKLQTQIGYKFNNINLLRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLAKDI 103

Query: 89  XXXXXXXXXXXXXXXXXXXXXXXXXXRVGIPSIVRVAAGTKPTAPPVVCGALRALIGAVA 148
                                     R+G+  I+RV+  T  +   ++C   RA+ GA+A
Sbjct: 104 DISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIA 163

Query: 149 VDANSTHAAEEVFWKLH 165
           +DA +   A +VFWK+H
Sbjct: 164 IDAGTVDEAIKVFWKVH 180



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,830,529
Number of extensions: 39463
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)