BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0852200 Os03g0852200|AK068059
(249 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G04860.1 | chr4:2460135-2461378 FORWARD LENGTH=245 393 e-110
AT4G21810.1 | chr4:11575345-11577003 REVERSE LENGTH=245 386 e-108
AT4G29330.1 | chr4:14444937-14446952 FORWARD LENGTH=267 153 9e-38
>AT4G04860.1 | chr4:2460135-2461378 FORWARD LENGTH=245
Length = 244
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/245 (77%), Positives = 211/245 (86%), Gaps = 1/245 (0%)
Query: 1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNF 60
MAQAVEEWY+QMPIITRSYLTAAV+TTVGC+L+IISPY+LYLNP LVV+ Y+ WRLVTNF
Sbjct: 1 MAQAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNF 60
Query: 61 LYFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYI 120
LYFRK ARYCKLLEENSFRG+TADF YMLLFGA+VLTGIVLIGGMIPY+
Sbjct: 61 LYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYL 120
Query: 121 SETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTW 180
S +FA+I+FLSNSLTFMMVYVWSK NP+IHMSFLGLFTFTAAYLPWVLLGFSILVG+S W
Sbjct: 121 SASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180
Query: 181 VDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVARPPNAGLGAGARFG 240
VDLLGMIAGH YYFL +VYPRMT RRPLKTPSF+KALFAD+ VVVARP + A A F
Sbjct: 181 VDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRF-AAAPFD 239
Query: 241 AMGAD 245
+ D
Sbjct: 240 EIHQD 244
>AT4G21810.1 | chr4:11575345-11577003 REVERSE LENGTH=245
Length = 244
Score = 386 bits (991), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/245 (77%), Positives = 208/245 (84%), Gaps = 1/245 (0%)
Query: 1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNF 60
MAQAVEEWY+QMPIITRSYLTAAVVTTVGC+LEIISPY+LYLNP LVV+ Y+ WRLVTNF
Sbjct: 1 MAQAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNF 60
Query: 61 LYFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYI 120
LYFRK ARYCKLLEENSFRG+TADF YMLLFGATVLTGIVLIGGMIPY+
Sbjct: 61 LYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYL 120
Query: 121 SETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTW 180
S +F++I+FLSNSLTFMMVYVWSK NP+IHMSFLGLFTFTAAYLPWVLLGFSILVG+S W
Sbjct: 121 SVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180
Query: 181 VDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVARPPNAGLGAGARFG 240
D LGMIAGH YYFL VYPRMT RRPLKTPSF+KALFAD+ VV+ARP + A A F
Sbjct: 181 GDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRF-AHAPFD 239
Query: 241 AMGAD 245
+ D
Sbjct: 240 EIHQD 244
>AT4G29330.1 | chr4:14444937-14446952 FORWARD LENGTH=267
Length = 266
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 7 EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKX 66
E+Y +P IT++Y T TTV L +++P H+ L P+LV++ ++IWRL+TN +
Sbjct: 6 EFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGF 65
Query: 67 XXXXXXXXXXXARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFAR 126
ARY LE+ F RTADF +M++FG+ L L+ +IP+ F
Sbjct: 66 SINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTL----LVLSVIPFFWTPF-- 119
Query: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186
L SL FM++Y+WS+ P ++S GL T A YLPW +L ++ GS DLLG+
Sbjct: 120 ---LGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGI 176
Query: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219
IAGH+YYFL ++P TG+ LKTP ++ + A
Sbjct: 177 IAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVA 209
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.142 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,173,241
Number of extensions: 199188
Number of successful extensions: 490
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 3
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)