BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0851500 Os03g0851500|AK070236
         (192 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47870.1  | chr5:19384555-19385808 REVERSE LENGTH=200          169   7e-43
AT1G71310.2  | chr1:26878717-26879844 REVERSE LENGTH=177          122   1e-28

>AT5G47870.1 | chr5:19384555-19385808 REVERSE LENGTH=200
          Length = 199

 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 97/141 (68%), Gaps = 5/141 (3%)

Query: 52  NYVVVPLD--AAPSGITRPLVEILRDLNKRVPDTVVXXXX--XXXXXXDPVIPWYHANRM 107
           NYVV P+D  ++ S ITRPL+EILRDLNK++PD +V               IPWYHANRM
Sbjct: 60  NYVV-PIDKFSSSSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRM 118

Query: 108 LSFYAPGWCGEVRDVIYTDNGKVTVIYRVTVRGTDGEVHREAAGTTSLNDARFDDPVXXX 167
           LSFYAPGWCGEVRDVI+++NG VTV+YR+T+RG+DGE HRE+ GT +  D   +DPV   
Sbjct: 119 LSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAA 178

Query: 168 XXXXXXXXXXRFGFGLYLYHE 188
                     RFG GLYLYHE
Sbjct: 179 EEIAFCRACARFGLGLYLYHE 199



>AT1G71310.2 | chr1:26878717-26879844 REVERSE LENGTH=177
          Length = 176

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 81/132 (61%), Gaps = 2/132 (1%)

Query: 59  DAAPSGITRPLVEILRDLNKRVPDTVVXXXXXXXXXXDPVIPWYHANRMLSFYAPGWCGE 118
           D   SGI+RPL EIL++LNK+VPD+V+             IPW+  NR+++ +AP W GE
Sbjct: 44  DVPTSGISRPLAEILKELNKKVPDSVIRTRVEDGCSI-KYIPWHIVNRIMNMHAPEWSGE 102

Query: 119 VRDVIYT-DNGKVTVIYRVTVRGTDGEVHREAAGTTSLNDARFDDPVXXXXXXXXXXXXX 177
           VR V Y+ D   VTV YRVT+ GTD E+ RE+ GTTS++D  + D V             
Sbjct: 103 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 162

Query: 178 RFGFGLYLYHED 189
           RFG GL+LYHED
Sbjct: 163 RFGLGLHLYHED 174



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,969,728
Number of extensions: 89939
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)