BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0850800 Os03g0850800|AK101366
         (214 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14100.1  | chr4:8120749-8122288 FORWARD LENGTH=207            204   2e-53
AT3G23760.1  | chr3:8562965-8564640 REVERSE LENGTH=195            195   1e-50

>AT4G14100.1 | chr4:8120749-8122288 FORWARD LENGTH=207
          Length = 206

 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/171 (57%), Positives = 120/171 (70%), Gaps = 5/171 (2%)

Query: 27  PTPTPWPAQFHAKLLMEFHGNLSLADLWYDWPGGRNLHVIRYQLAADEPFYDNEWNNGTS 86
           P PTPWP QFHA + M + G+LS+ DLWYDW  GRN ++I+ QL      YD EWNNGTS
Sbjct: 28  PVPTPWPHQFHALMFMNYSGDLSMIDLWYDWTNGRNFNIIQEQLGGIT--YDLEWNNGTS 85

Query: 87  FFYT-PARRACRSAAVGVGILPPNWLVPGSVYLGRHPADGFDCHVWAKADFITYYEDTLT 145
           FFYT    ++CRS  + VGIL PNWL  G+ YLG+    GF C+VW K DFI YYED  T
Sbjct: 86  FFYTLDESKSCRSGQLEVGILRPNWL-DGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVET 144

Query: 146 KRPVKWVFYTGRTSHVMSFEEGAVLEDAEWQAPEYCFGKGDETETSNDNAL 196
           KRPV+W+FYTGR +H+M++E GAVLED +WQAP YCF K ++   S   AL
Sbjct: 145 KRPVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNK-EKKSLSTKGAL 194



>AT3G23760.1 | chr3:8562965-8564640 REVERSE LENGTH=195
          Length = 194

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 117/164 (71%), Gaps = 6/164 (3%)

Query: 22  GSEPTPTPTP--WPAQFHAKLLMEFHGNLSLADLWYDWPGGRNLHVIRYQLAADEPFYDN 79
           G+EP   P P  WP QFHA +LM   G+L + DLWYDW  GRN ++I+ QL   +  YD 
Sbjct: 26  GTEPEKEPVPAVWPEQFHALMLMNKSGSLEIVDLWYDWVNGRNFNIIQKQLG--KLTYDL 83

Query: 80  EWNNGTSFFYT-PARRACRSAAVGVGILPPNWLVPGSVYLGRHPADGFDCHVWAKADFIT 138
           EWNNGTSF+YT  A + CR+    VGIL PNWL  G+ Y+G+   +GF C+VW K +F+ 
Sbjct: 84  EWNNGTSFYYTLDASKTCRTVHFEVGILRPNWL-DGAKYMGQRHVNGFLCNVWEKVEFLW 142

Query: 139 YYEDTLTKRPVKWVFYTGRTSHVMSFEEGAVLEDAEWQAPEYCF 182
           YYED +TKRPV+W+FYTGR +HVM+FE GAVLED +WQAP YCF
Sbjct: 143 YYEDVVTKRPVQWIFYTGREAHVMTFEVGAVLEDEKWQAPVYCF 186



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.138    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,435,801
Number of extensions: 245745
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)