BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0848400 Os03g0848400|AK067600
(217 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48660.1 | chr5:19736986-19738327 FORWARD LENGTH=220 178 2e-45
AT3G07190.1 | chr3:2285979-2287155 REVERSE LENGTH=221 172 2e-43
AT5G42570.1 | chr5:17021459-17022497 REVERSE LENGTH=219 127 4e-30
AT1G11905.1 | chr1:4014958-4016222 FORWARD LENGTH=222 110 6e-25
AT3G20450.1 | chr3:7130723-7131239 REVERSE LENGTH=138 69 1e-12
>AT5G48660.1 | chr5:19736986-19738327 FORWARD LENGTH=220
Length = 219
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 134/192 (69%)
Query: 22 KVGPLREVAMRGVEQAKTGKGPATVKTLACTLSVILMSSVASILKIQNRGLKLGTVSPMD 81
K+GPLRE+ ++ ++Q K GKGPATVKT+A T+SVIL S++ SI+KIQN+G KLGT+SPMD
Sbjct: 22 KIGPLRELVIKSLDQMKMGKGPATVKTIAGTMSVILFSNLMSIVKIQNKGAKLGTMSPMD 81
Query: 82 QVLWRTHLLEASLIGFTLFLAFVIDRLHHYLRKLITLRKAANTSREEVEKLQMENRLFRX 141
QVLWRTHLLEASL+G LFL F+IDR+HHYLRKLI LR +S+EE+E+LQ E +
Sbjct: 82 QVLWRTHLLEASLLGVVLFLGFIIDRMHHYLRKLINLRSNVGSSKEELEQLQKERTELKE 141
Query: 142 XXXXXXXXXXXLHQEIAKLNESMKKLKSESEDHERKVLEAEAHVNALQKQSXXXXXXXXX 201
L +++ + E +KK ++ES++ E+K+ AE HV ALQKQS
Sbjct: 142 KEEKASKEIKQLQVKLSSITERLKKAETESKEKEKKLETAETHVTALQKQSAELLLEYDR 201
Query: 202 XXXXNQILQSQL 213
NQ LQSQ+
Sbjct: 202 LLEDNQHLQSQI 213
>AT3G07190.1 | chr3:2285979-2287155 REVERSE LENGTH=221
Length = 220
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 134/192 (69%)
Query: 22 KVGPLREVAMRGVEQAKTGKGPATVKTLACTLSVILMSSVASILKIQNRGLKLGTVSPMD 81
K+GPLRE+ M+ ++Q K GK PAT+KT+A T+SVIL+S++ +I+KIQN+G KLGT+SPMD
Sbjct: 22 KIGPLRELVMKSLDQLKLGKRPATLKTIAGTMSVILLSNLMNIIKIQNKGAKLGTMSPMD 81
Query: 82 QVLWRTHLLEASLIGFTLFLAFVIDRLHHYLRKLITLRKAANTSREEVEKLQMENRLFRX 141
QVLWRTHLLEASL+G LF F+IDR HHYL KLITLR +S+ E+E+L+ E +
Sbjct: 82 QVLWRTHLLEASLMGVVLFFGFIIDRTHHYLEKLITLRSNVGSSKGELEELRKERIELKE 141
Query: 142 XXXXXXXXXXXLHQEIAKLNESMKKLKSESEDHERKVLEAEAHVNALQKQSXXXXXXXXX 201
L ++++ ++E++KKL+ ES++ E K+ AEAHV ALQKQS
Sbjct: 142 KEEKTSKEIKQLKEKLSCVSENLKKLEKESKEKETKLETAEAHVTALQKQSSELLLEYDR 201
Query: 202 XXXXNQILQSQL 213
NQ LQSQ+
Sbjct: 202 LLEDNQNLQSQI 213
>AT5G42570.1 | chr5:17021459-17022497 REVERSE LENGTH=219
Length = 218
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 109/193 (56%), Gaps = 7/193 (3%)
Query: 25 PLREVAMRGVEQAKTGKGPATVKTLACTLSVILMSSVASILKIQNRGLKLGTVSPMDQVL 84
PLR++ + ++ K G+GP VKT+ T+ V+L+SS+ S++ IQ R ++P DQVL
Sbjct: 24 PLRKLIILTFDRIKRGRGPVVVKTIGTTVFVVLLSSIYSLVNIQRRSEDGAVLNPTDQVL 83
Query: 85 WRTHLLEASLIGFTLFLAFVIDRLHHYLRKLITLRKAANTSREEVEKLQMENRLFRXXXX 144
HLLEASL+GF LFL+ +IDRLHHY+R+L LRK T+++ +NR F
Sbjct: 84 ASKHLLEASLMGFVLFLSLMIDRLHHYIRELRLLRKTMETAKK-------QNRGFEDGKT 136
Query: 145 XXXXXXXXLHQEIAKLNESMKKLKSESEDHERKVLEAEAHVNALQKQSXXXXXXXXXXXX 204
L +EIA L +K L+SESE +++ A+ AL+KQ+
Sbjct: 137 TSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGETEALRKQADGFLMEYDRLLE 196
Query: 205 XNQILQSQLHYKG 217
NQ L++QL G
Sbjct: 197 DNQNLRNQLESIG 209
>AT1G11905.1 | chr1:4014958-4016222 FORWARD LENGTH=222
Length = 221
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 107/190 (56%), Gaps = 7/190 (3%)
Query: 25 PLREVAMRGVEQAKTGKGPATVKTLACTLSVILMSSVASILKIQNRGLKLGTVSPMDQVL 84
P+R++ + ++++K G+GP ++T++ T+ V+L++SV +++ IQ R ++ G V+P D+V+
Sbjct: 24 PIRKLLIMSLDRSKRGRGPVVIQTVSATVIVLLVTSVYNMMGIQKRWIEDGVVNPTDEVI 83
Query: 85 WRTHLLEASLIGFTLFLAFVIDRLHHYLRKLITLRKAANTSREEVEKLQMENRLFRXXXX 144
HLLE++L+G LFL +IDRLHHY+R+L R+ +E ++ E L
Sbjct: 84 MAKHLLESTLMGGFLFLGLMIDRLHHYMREL-------RIRRKNMEVIKKEGALLEGVKA 136
Query: 145 XXXXXXXXLHQEIAKLNESMKKLKSESEDHERKVLEAEAHVNALQKQSXXXXXXXXXXXX 204
L +EI L + ++L SE E +++ + ALQKQS
Sbjct: 137 RGLDEVKNLMEEITSLRKRQEQLDSELEARSKEIRTEKTSAVALQKQSEGFLIEFNRLLE 196
Query: 205 XNQILQSQLH 214
NQ+L+ QLH
Sbjct: 197 ENQVLRDQLH 206
>AT3G20450.1 | chr3:7130723-7131239 REVERSE LENGTH=138
Length = 137
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 25 PLREVAMRGVEQAKTGKGPATVKTLACTLSVILMSSVASILKIQNRGLKLGTVS-PMDQV 83
P R V ++ ++ +K G+ P KT+A T+ V+ S + S ++I R + G V+ DQV
Sbjct: 28 PARRVVVKLLDLSKQGRAPLVAKTVAATMLVLFGSVMFSTIQIHTRVSESGGVANSTDQV 87
Query: 84 LWRTHLLEASLIGFTLFLAFVIDRLHHYLRKL 115
++ LLEA L+G LFLA VIDR+H+Y R+L
Sbjct: 88 MFANRLLEAFLMGTVLFLAMVIDRMHYYTREL 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.131 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,950,942
Number of extensions: 90292
Number of successful extensions: 439
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 5
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)