BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0845300 Os03g0845300|016-094-A05
         (369 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47210.1  | chr5:19169222-19171012 REVERSE LENGTH=358           77   2e-14
AT4G17520.1  | chr4:9771496-9773313 FORWARD LENGTH=361             74   1e-13
AT4G16830.1  | chr4:9470621-9472308 FORWARD LENGTH=356             60   2e-09

>AT5G47210.1 | chr5:19169222-19171012 REVERSE LENGTH=358
          Length = 357

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 57/84 (67%)

Query: 2   MTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQLLEKKKLDDENASKKAENEQRKEP 61
           MTLEEYEK+LEEK+KAL+ +K E RKV  +VFE MQ L  KK  DE    K  +++ K  
Sbjct: 231 MTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRK 290

Query: 62  AKQVKAPKAINLNDLLKPADGQAY 85
               KA K++++N+ LKPADG+ Y
Sbjct: 291 DATEKAKKSLSINEFLKPADGKRY 314



>AT4G17520.1 | chr4:9771496-9773313 FORWARD LENGTH=361
          Length = 360

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 62/90 (68%), Gaps = 2/90 (2%)

Query: 1   DMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQLLEKKKLDDENASKKAENEQRKE 60
           +MTLEEYEKVLEEK+KAL+ +K E RKV  + FE MQ L  KK +++    K   E+ K 
Sbjct: 215 EMTLEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR 274

Query: 61  PA-KQVKAPKAINLNDLLKPADGQA-YRPR 88
              ++ K  K++++N+ LKPADG++ YRPR
Sbjct: 275 ITEREEKTRKSLSINEFLKPADGKSYYRPR 304



>AT4G16830.1 | chr4:9470621-9472308 FORWARD LENGTH=356
          Length = 355

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 57/81 (70%)

Query: 1   DMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQLLEKKKLDDENASKKAENEQRKE 60
           +MTL+EYEK+LEEK+KAL+   +  RKV  +VFE MQ L  KK +DE   K   ++ +++
Sbjct: 225 EMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRK 284

Query: 61  PAKQVKAPKAINLNDLLKPAD 81
             K+ KA KA+++N+ LKPA+
Sbjct: 285 DDKEEKAKKAVSINEFLKPAE 305



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.126    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,636,222
Number of extensions: 117896
Number of successful extensions: 792
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 3
Length of query: 369
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,364,969
Effective search space: 2250176661
Effective search space used: 2250176661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 112 (47.8 bits)