BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0843600 Os03g0843600|AK068216
(893 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G49960.1 | chr5:20324173-20327687 REVERSE LENGTH=825 900 0.0
AT5G02940.1 | chr5:684671-689674 REVERSE LENGTH=814 174 2e-43
AT5G43745.1 | chr5:17569435-17574954 REVERSE LENGTH=818 170 4e-42
>AT5G49960.1 | chr5:20324173-20327687 REVERSE LENGTH=825
Length = 824
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/661 (66%), Positives = 531/661 (80%), Gaps = 1/661 (0%)
Query: 233 LRSSQDSEEEVPINKRLAYRVDIFLSLQPYAKPXXXXXXXXXXXXXXXXXXXXXNXXXXX 292
LR + +E+VP+ KRLAY +D+ S+ PYAK +
Sbjct: 165 LRRTNQKKEDVPLKKRLAYSLDVCFSVYPYAKLLALLLATVVLIVYGGLALYAVSDCGVD 224
Query: 293 XXXXXXXTFVADSGNHANAEGFGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKG 352
TFVADSG+HA+ G G ++VSV+IS GGML+FA MLGL++D+IS+ DSLRKG
Sbjct: 225 EALWLSWTFVADSGSHADRVGVGARIVSVAISAGGMLIFATMLGLISDAISKMVDSLRKG 284
Query: 353 RSEVIEQSHTLVLGWSDKLGSLLNQIAIANESLGGGTIVVMAEKDKEEMEADIAKMEFDL 412
+SEV+E +H L+LGWSDKLGSLL Q+AIAN+S+GGG +VV+AE+DKEEME DIAK EFDL
Sbjct: 285 KSEVLESNHILILGWSDKLGSLLKQLAIANKSIGGGVVVVLAERDKEEMETDIAKFEFDL 344
Query: 413 KGTAIICRSGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLR 472
GT++ICRSGSPLILADLKKVSVS ARAI+VL + NADQSDARALR VLSLTGVKEG +
Sbjct: 345 MGTSVICRSGSPLILADLKKVSVSNARAIIVLGSDENADQSDARALRVVLSLTGVKEGWK 404
Query: 473 GHIVVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCE 532
GH+VVE+ DLDNE LVKLVGG+ +ETVVAHDVIGRLMIQCA QPGLAQIWEDILGFEN E
Sbjct: 405 GHVVVEMCDLDNEPLVKLVGGERIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENAE 464
Query: 533 FYIKRWPQLDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVIAED 592
FYIK+WPQLDG FEDVLISFP+AIPCG+KVA+ GKI+LNP D YVL+EGDE+LVIAED
Sbjct: 465 FYIKKWPQLDGYCFEDVLISFPNAIPCGVKVAA-DGKIVLNPSDDYVLKEGDEILVIAED 523
Query: 593 DDTYAPAPLPKVMRGYLPKDFVVPKSPERILFCGWRRDMEDMIMVLDAFLAPGSELWMFN 652
DDTYAP LP+V + PK PK PE+ILFCGWRRD++DMI VL+A LAPGSELWMFN
Sbjct: 524 DDTYAPGSLPEVRMCHFPKMQDPPKYPEKILFCGWRRDIDDMIKVLEALLAPGSELWMFN 583
Query: 653 DVPEMDRERKLIDGGLDFSRLENITLVHREGNAVIRRHLESLPLESFDSILILADESVED 712
+VP+ +RE+KL D GL+ S+L NI LVHR+GNAVIRRHLESLPLE+FDSILILA++S+E+
Sbjct: 584 EVPDQEREKKLTDAGLNISKLVNIKLVHRQGNAVIRRHLESLPLETFDSILILAEQSLEN 643
Query: 713 SAIQADSRSLATLLLIRDIQAKRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISE 772
S + +DSRSLATLLLIRDIQ+KRLP+++A S + F WI +MQQASDKS++ISE
Sbjct: 644 SIVHSDSRSLATLLLIRDIQSKRLPYKDAKSSALRISGFPNCCWIRKMQQASDKSIVISE 703
Query: 773 ILDPRTKNLLSVSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADL 832
ILD RTKNL+SVS+ISDYVLSNELVSMALAMVAED+QIN VL+ELFAE+GNE+ IRPA+
Sbjct: 704 ILDSRTKNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAEF 763
Query: 833 YLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEK 892
Y+ + EE+ F+++M R RQR+EI+IGYRL E+A+INP DK +WS DVFVVI
Sbjct: 764 YIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIASS 823
Query: 893 E 893
+
Sbjct: 824 Q 824
>AT5G02940.1 | chr5:684671-689674 REVERSE LENGTH=814
Length = 813
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/638 (24%), Positives = 301/638 (47%), Gaps = 77/638 (12%)
Query: 302 VADSGNHANAEGFGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKG-RSEVIEQS 360
+ ++ H + +L+ ++I G++ ++ +L +T+ +R+G +V+E
Sbjct: 200 LVNADTHLEQKTRFERLIGFVLAIWGIVFYSRLLSTMTEQFRYHMKKVREGAHMQVLESD 259
Query: 361 HTLVLGWSDKLGSLLNQ--------IAIANESLGGGTIVVMAEKDKEEMEADIAKMEFDL 412
H ++ G + L +L Q + + + T+++M++ ++EM+ D
Sbjct: 260 HIIICGINSHLPFILKQLNSYQQHAVRLGTTTARKQTLLLMSDTPRKEMDKLAEAYAKDF 319
Query: 413 KGTAIICRSGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLR 472
I+ +S S + ++ + ARAI++L +G+ + D A +VL+L +++
Sbjct: 320 DQLDILTKSCSLNMTKSFERAAACMARAIIILPTKGDRYEVDTDAFLSVLALEPIQKMES 379
Query: 473 GHIVVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCE 532
+VE+S + L+K + G VE V + +L +QC+RQ L +I+ +L +
Sbjct: 380 IPTIVEVSSSNMYDLLKSISGLKVEPV--ENSTSKLFVQCSRQKDLIKIYRHLLNYSKNV 437
Query: 533 FYIKRWPQLDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVIA-- 590
F + +P L GM++ + + F + + CGI GK+ +P+D L E D++L IA
Sbjct: 438 FNLCSFPNLTGMKYRQLRLGFQEVVVCGI---LRDGKVNFHPNDDEELMETDKLLFIAPL 494
Query: 591 -----------------EDDDTYAPAPLPKVMRGYLPKDFVVP-----------KSP-ER 621
E DDT K R L K P K P E
Sbjct: 495 KKDFLYTDMKTENMTVDETDDTRKQVYEEKKSR--LEKIITRPSKSLSKGSDSFKGPKES 552
Query: 622 ILFCGWRRDMEDMIMVLDAFLAPGSELWMFNDVPEMDRERKLIDGGLDFSRLENITLVHR 681
IL GWR D+ +MI D++L PGS L + +DVP D R+ +D + +++NI + H
Sbjct: 553 ILLLGWRGDVVNMIKEFDSYLGPGSSLEILSDVPLED--RRGVDQSIATGKIKNIQVSHS 610
Query: 682 EGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSRSLATLLLIRDIQAKRLPFREA 741
GN H++ L+ +SI+ + ++ + + D R T+++I D R+
Sbjct: 611 VGN-----HMDYDTLK--ESIMHMQNKYEKG---EEDIR--LTIVVISD--------RDL 650
Query: 742 MVSHVTRGSFCEGSWIGEMQQASDK-----SVIISEILDPRTKNLLSVSKIS-DYVLSNE 795
++ +R + + +K + SEI+D + ++ K S ++ + E
Sbjct: 651 LLGDPSRADKQSAYTLLLAETICNKLGVKVHNLASEIVDTKLGKQITRLKPSLTFIAAEE 710
Query: 796 LVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEI 855
++S+ A VAE+ ++N+V +++ +G+E+ ++ +LY++E E +F E+ R R+E+
Sbjct: 711 VMSLVTAQVAENSELNEVWKDILDAEGDEIYVKDIELYMKEGENPSFTELSERAWLRREV 770
Query: 856 VIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893
IGY + + IINP K +D +VI+E E
Sbjct: 771 AIGY--IKGGKKIINPVPKTEPVSLEMEDSLIVISELE 806
>AT5G43745.1 | chr5:17569435-17574954 REVERSE LENGTH=818
Length = 817
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 158/644 (24%), Positives = 294/644 (45%), Gaps = 95/644 (14%)
Query: 305 SGNHANAEGFGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKG-RSEVIEQSHTL 363
S H + +++ ++I G+L ++ +L +T+ LR+G + +V+E H +
Sbjct: 207 SSTHLKQKTRIERVIGFVLAIWGILFYSRLLSTMTEQFRYNMTKLREGAQMQVLEADHII 266
Query: 364 VLGWSDKLGSLLNQIAIANES---LGGGT-----IVVMAEKDKEEMEADIAKMEFDLKGT 415
+ G + L +L Q+ +E LG T +++M++ +++M+ D
Sbjct: 267 ICGINSHLPFILKQLNSYHEHAVRLGTATARKQRLLLMSDTPRKQMDKLAEAYSKDFNHI 326
Query: 416 AIICRSGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLRGHI 475
I+ +S S + ++ + S ARAI++L +G+ + D A +VL+L +++
Sbjct: 327 DILTKSCSLNLTKSFERAAASMARAIIILPTKGDRYEVDTDAFLSVLALQPIQKMESIPT 386
Query: 476 VVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYI 535
+VE+S + L+K + G VE V +V +L +QC+RQ L +I+ +L + F +
Sbjct: 387 IVEVSSPNTYDLLKSISGLKVEPV--ENVTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNL 444
Query: 536 KRWPQLDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVIA----- 590
+P L G ++ + + F + + CG+ GK+ +P+D L E D++L IA
Sbjct: 445 CSFPNLVGTKYRQLRLGFQEVVVCGL---LRDGKVNFHPNDNEELMETDKLLFIAPLNWK 501
Query: 591 EDDDTYAPAPLPKVM-------------RGYLPKDFVVP-----------KSP-ERILFC 625
+ Y L + R L K + P K P E IL
Sbjct: 502 KKQLLYTDMKLENITVPTDTRKQVFEKKRSRLSKIIMRPRKSLSKGSDSVKGPTESILLL 561
Query: 626 GWRRDMEDMIMVLDAFLAPGSELWMFNDVPEMDRERKLIDGGLDFSRLENITLVHREGN- 684
GWR D+ MI D +L PGS + + +DV DR R + + +++NI + H+ GN
Sbjct: 562 GWRGDVVQMIEEFDNYLGPGSSMEILSDVSLEDRRR--VGDSIGSVKIKNIQVSHKVGNP 619
Query: 685 --------AVIR-----RHLESLPLESFDSILILADES-VEDSAIQADSRSLATLLLIRD 730
++R R +++PL +IL+++D + +AD +S +LLL
Sbjct: 620 LNYDTLKQTIMRMKSKYRKGKNIPL----TILVISDRDWLLGDPSRADKQSAYSLLLAES 675
Query: 731 IQAKRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISEILDPRT-KNLLSVSKISD 789
I C + A SEI+D + K + +
Sbjct: 676 I--------------------CNKLGVKVHNLA-------SEIVDSKLGKQITGLKPSLT 708
Query: 790 YVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRG 849
++ + E++S+ A VAE+ ++N+V +++ G+E+ ++ +LY++E E +F E+ R
Sbjct: 709 FIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERA 768
Query: 850 RQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893
R+E+ IGY + + +INP K D +VI+E E
Sbjct: 769 WLRREVAIGY--IKGGKKMINPVPKNEPLSLEMDDSLIVISELE 810
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,700,318
Number of extensions: 606929
Number of successful extensions: 1683
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1675
Number of HSP's successfully gapped: 5
Length of query: 893
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 786
Effective length of database: 8,173,057
Effective search space: 6424022802
Effective search space used: 6424022802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)