BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0838900 Os03g0838900|AK066994
         (218 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09620.1  | chr4:6077122-6078899 REVERSE LENGTH=213            182   1e-46

>AT4G09620.1 | chr4:6077122-6078899 REVERSE LENGTH=213
          Length = 212

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 111/166 (66%), Gaps = 2/166 (1%)

Query: 53  GKTQNSRTQRKWRTFSADQAQATVVDAGDNKTWEEAKQILTSLDYSIEDADKMLKKAFGW 112
           G   +S ++ KW  F +     T  +  D   WEE K+ L+  D+S+E+ DK+L KAFG 
Sbjct: 49  GVRTSSYSRSKWIVFCSTTQVETSNE--DPNIWEECKEALSCFDFSVEEKDKILGKAFGH 106

Query: 113 IHSPYWSEERKKEVPNAEVVSGVLNYIRTXXXXXXXXXXXXXXFPEVLGCDLDSEVKLNV 172
           IHSPYW+EER KE P  E ++ +L ++R+              FPEVLGC L+ E+K N+
Sbjct: 107 IHSPYWTEERVKENPKVETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNI 166

Query: 173 GKLDSDWGINGKTLRSLLLRNPKVLGYNVDCRGDCMAQCTRCWVRF 218
           G L++ WGI GK LR+LLLRNPKVLGYNVDC+GDC+AQCTRCWVRF
Sbjct: 167 GILENQWGITGKQLRNLLLRNPKVLGYNVDCKGDCVAQCTRCWVRF 212



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,645,049
Number of extensions: 178506
Number of successful extensions: 449
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,502,049
Effective search space: 1045752027
Effective search space used: 1045752027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)