BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0832900 Os03g0832900|AK060945
         (265 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49580.1  | chr5:20123823-20126813 REVERSE LENGTH=696          297   4e-81
AT1G79030.1  | chr1:29730922-29733570 REVERSE LENGTH=562          199   1e-51
AT1G16680.1  | chr1:5702930-5705537 FORWARD LENGTH=555            195   2e-50

>AT5G49580.1 | chr5:20123823-20126813 REVERSE LENGTH=696
          Length = 695

 Score =  297 bits (760), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 146/233 (62%), Positives = 178/233 (76%), Gaps = 1/233 (0%)

Query: 1   MLVHPDKNMGNDKAADAFKKLQNAYEVLLDSLKRKTYDDELRREELLNYFRRFQSASQKK 60
           MLVHPDKNMGN++AA+AFKKLQNAYEVLLDS+K+K+YDDEL+REELLNYFRRFQ++SQK 
Sbjct: 435 MLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYDDELKREELLNYFRRFQNSSQKD 494

Query: 61  G-GSGIFRQGFSPSEGVDEGPYGLSRRIACKKCGDFHLWIYTGRAKSQARWCQDCNDFHQ 119
             G G    GF  SEG  E  +   R+IACKKCG+ H W  T ++KS ARWCQDC +FHQ
Sbjct: 495 TRGHGFSGSGFGSSEGEGEEAFRECRQIACKKCGNLHAWFLTKKSKSTARWCQDCKEFHQ 554

Query: 120 AKDGDGWVEQSFQPVLFGLLHKPELPHAYVCAESIIFDVTEWFTCQGMRCPANTHKPSFH 179
           AKDGDGWVEQ+ Q VLFGL  K ++P AYVCA+S I++ ++W+ CQGMRCPANTHKPSFH
Sbjct: 555 AKDGDGWVEQASQHVLFGLFQKVDMPRAYVCADSKIYEASQWYICQGMRCPANTHKPSFH 614

Query: 180 VNASLLKQNSGKGSTSAQRGGGIPNGVNMDGGIDEEEFFEWLQNALQSGMFES 232
           VN +      G   +S Q+G       N D  + EEEF+EWLQNA+QSGMF++
Sbjct: 615 VNMNATAAKRGTSGSSGQKGNQRMPNTNPDETMTEEEFYEWLQNAVQSGMFDN 667



>AT1G79030.1 | chr1:29730922-29733570 REVERSE LENGTH=562
          Length = 561

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/231 (49%), Positives = 149/231 (64%), Gaps = 20/231 (8%)

Query: 1   MLVHPDKNMGNDKAADAFKKLQNAYEVLLDSLKRKTYDDELRREELLNYFRRFQSASQKK 60
           MLVHPDKNMG+  A+++FKKLQ+AYEVL D +K++ YD++LR+EE      R +S  Q  
Sbjct: 321 MLVHPDKNMGSPLASESFKKLQSAYEVLSDFVKKRDYDEQLRKEE-----SRTRSVCQTS 375

Query: 61  GGSGIFRQGFSPSEGVDEGPYGLSRRIACKKCGDFHLWIYTGRAKSQARWCQDCNDFHQA 120
             S        P    DE     SRRI C KCG+ H+WI T R K++ARWCQDC  +HQA
Sbjct: 376 HASS---HQSGPDYRSDE-----SRRIHCTKCGNSHIWICTNRTKAKARWCQDCGQYHQA 427

Query: 121 KDGDGWVEQSFQPVLFGLLHKPELPHAYVCAESIIFDVTEWFTCQGMRCPANTHKPSFHV 180
           KDGDGWVE     + F   HK E+P A+VCAES IFDV+EW  CQGM C  NTH+PSFHV
Sbjct: 428 KDGDGWVELK-GTLPFERAHKIEIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHV 486

Query: 181 NASLLKQNSGKGSTSAQRGGGIPNGVNMDGGIDEEEFFE-WLQNALQSGMF 230
           N   L++ + + ++S       P  ++++   ++EE FE WLQ AL SG+F
Sbjct: 487 NMVGLEKTTQRSNSSR-----FPWDLDVEMMDEDEEEFELWLQQALASGLF 532



>AT1G16680.1 | chr1:5702930-5705537 FORWARD LENGTH=555
          Length = 554

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/231 (47%), Positives = 147/231 (63%), Gaps = 20/231 (8%)

Query: 1   MLVHPDKNMGNDKAADAFKKLQNAYEVLLDSLKRKTYDDELRREELLNYFRRFQSASQKK 60
           MLVHPDKNMG+  A+++FKKLQ+AYEVL DS+KR+ YD+ L++EE         S +   
Sbjct: 318 MLVHPDKNMGSPLASESFKKLQSAYEVLSDSVKRRDYDELLKKEESRTKIVCQSSHASSH 377

Query: 61  GGSGIFRQGFSPSEGVDEGPYGLSRRIACKKCGDFHLWIYTGRAKSQARWCQDCNDFHQA 120
             S  +R     SE         SRRI C KCG+ H+W+ T R+K++ARWCQ+C  +HQA
Sbjct: 378 QNSAAYR-----SEE--------SRRIHCTKCGNSHIWVCTNRSKAKARWCQECGQYHQA 424

Query: 121 KDGDGWVEQSFQPVLFGLLHKPELPHAYVCAESIIFDVTEWFTCQGMRCPANTHKPSFHV 180
           KDGDGWVE     ++F   HK E+P A+VCAE  +FDV+EW  CQGM C  NTH+PSFHV
Sbjct: 425 KDGDGWVEHK-GTLVFEKAHKIEIPRAFVCAEGKVFDVSEWAICQGMACRPNTHRPSFHV 483

Query: 181 NASLLKQNSGKGSTSAQRGGGIPNGVNMDGGIDEEEFFE-WLQNALQSGMF 230
           N   L++     +T   +    P  ++++   ++EE FE WLQ AL SG+F
Sbjct: 484 NMVGLEK-----ATQRSKSSRFPWDLDVEMMDEDEEEFELWLQQALASGLF 529



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,947,430
Number of extensions: 270536
Number of successful extensions: 746
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 4
Length of query: 265
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 168
Effective length of database: 8,447,217
Effective search space: 1419132456
Effective search space used: 1419132456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)