BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0832600 Os03g0832600|AK120137
(506 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06580.1 | chr3:2049141-2051867 REVERSE LENGTH=497 681 0.0
>AT3G06580.1 | chr3:2049141-2051867 REVERSE LENGTH=497
Length = 496
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/485 (69%), Positives = 390/485 (80%), Gaps = 1/485 (0%)
Query: 23 FSSLEPIYGDGSPLDEXXXXXXXXXDKFHAVYAARPALFARSPGRVNLIGEHIDYEGYSV 82
F+SLEP+YG+GS L E F+ V+ A P LFARSPGRVNLIGEHIDYEGYSV
Sbjct: 12 FTSLEPVYGEGSLLQEATQRFDVLKANFNDVFGASPQLFARSPGRVNLIGEHIDYEGYSV 71
Query: 83 LPMAIRQDMIVAIRRAEG-KEVRVANVDDKYPICVYPADPDKEIDIKNHKWGHYFMCGYK 141
LPMAIRQD I+AIR+ E K++R+ANV+DKY +C YPADPD+EID+KNHKWGHYF+C YK
Sbjct: 72 LPMAIRQDTIIAIRKCEDQKQLRIANVNDKYTMCTYPADPDQEIDLKNHKWGHYFICAYK 131
Query: 142 GVYEYCRSKGIDMXXXXXXXXXXXXXXXXXSGLSSSAAFVCSATIAIMGVLEKNFPKKEV 201
G +EY +SKG+++ SGLSSSAAFVCSATIAIM V NF KKE+
Sbjct: 132 GFHEYAKSKGVNLGSPVGLDVLVDGIVPTGSGLSSSAAFVCSATIAIMAVFGHNFEKKEL 191
Query: 202 AQFTCQSERHIGTQSGGMDQAISIMAKPGFAELIDFNPIHATDVQLPPGGTFVIAHCLAE 261
AQ TC+ ERHIGTQSGGMDQAISIMAK GFAELIDFNP+ ATDV+LP GG+FVIAH LAE
Sbjct: 192 AQLTCECERHIGTQSGGMDQAISIMAKTGFAELIDFNPVRATDVKLPDGGSFVIAHSLAE 251
Query: 262 SKKAETAATNYNNRVVECRLAAIVLAIKLGMETKKAVSSVTTLSDVEGLCVSFAGKEGSS 321
S+KA TAA NYNNRVVECRLA+I+L +KLGME K+A+S V TLSDVEGLCVSFAG GSS
Sbjct: 252 SQKAVTAAKNYNNRVVECRLASIILGVKLGMEPKEAISKVKTLSDVEGLCVSFAGDRGSS 311
Query: 322 DPGVAVKKLLHEESYTTEEIEKITGQSLTSIFQSSQTSLDVLRAAKHFKLFQRAFHVYSE 381
DP +AVK+ L EE YT EEIEKI + L SI + TSL VL AA HFKL QRA HVYSE
Sbjct: 312 DPLLAVKEYLKEEPYTAEEIEKILEEKLPSIVNNDPTSLAVLNAATHFKLHQRAAHVYSE 371
Query: 382 ARRVYAFRDTVLSKLSAEDMLQKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALG 441
ARRV+ F+DTV S LS E+ L+KLGDLMNESHYSCSVLYECSCPELEELV+VC++NGALG
Sbjct: 372 ARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSVLYECSCPELEELVQVCKENGALG 431
Query: 442 ARLTGAGWGGCAVALVKEGIVPQFILNLKETYYKSRIDRGVINQKDLGLYVFASKPSSGA 501
ARLTGAGWGGCAVALVKE V QFI +KE YYK R+++GV+ ++D+ LY+FASKPSSGA
Sbjct: 432 ARLTGAGWGGCAVALVKEFDVTQFIPAVKEKYYKKRVEKGVVKKEDMELYLFASKPSSGA 491
Query: 502 AIFKL 506
AIF L
Sbjct: 492 AIFNL 496
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,656,256
Number of extensions: 379337
Number of successful extensions: 916
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 403
Effective length of database: 8,282,721
Effective search space: 3337936563
Effective search space used: 3337936563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)