BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0830900 Os03g0830900|AK066720
(594 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16070.1 | chr4:9096808-9100596 REVERSE LENGTH=655 315 5e-86
AT3G14075.1 | chr3:4663819-4666338 REVERSE LENGTH=643 279 2e-75
AT2G42450.1 | chr2:17672425-17674854 REVERSE LENGTH=547 85 1e-16
AT4G00500.1 | chr4:225214-226978 REVERSE LENGTH=461 65 8e-11
AT3G49050.1 | chr3:18181498-18183613 FORWARD LENGTH=478 60 3e-09
AT5G37710.1 | chr5:14979159-14981400 FORWARD LENGTH=437 58 2e-08
>AT4G16070.1 | chr4:9096808-9100596 REVERSE LENGTH=655
Length = 654
Score = 315 bits (807), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 224/355 (63%), Gaps = 9/355 (2%)
Query: 68 PYRPPSTCCEXXXXXXXXXXXXWDLTVGRWGLHGIAFGIKRHMKRQGDL--QHEYSGNDC 125
P + P+T E + T+G+W + +AFGI M+RQG+ Y+G++C
Sbjct: 52 PAQAPATWLETISTLSETLRFTYSETLGKWPIADLAFGINYLMRRQGNFPTASVYAGSNC 111
Query: 126 LQLKGHDAHTEVAYLLEHLKICMFYSKKTFSAFLQFGGYNQEDILIHKARARLMQPSFAL 185
++LKG + ++ LL L +CM +SKK F+ FL+ GY ED+L+ K +A +MQP+F +
Sbjct: 112 IELKGPEIIMDLTELLRFLTLCMLFSKKPFAVFLESAGYTHEDVLLQKPKAGIMQPAFTI 171
Query: 186 VCDKKSKCFLLFIRGAISTKERLTAATAAEVPFHHIVLSEGQISNVVLGYAHCGMLAAAR 245
+ D SKC LL IRG S K+ LTAAT A VPFHH VL +G +SN+VLGYAHCGM+AAAR
Sbjct: 172 IRDTNSKCILLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGLSNLVLGYAHCGMVAAAR 231
Query: 246 WIANLAKPHLHKAVQEFPDYQIKVIGHSMGAGIGAILTYILHEHHEFSSCTCLAFAPPAC 305
WIA L+ P L KA+ E P ++++++GHS+G G ++LTYIL E EF+S TC FAP AC
Sbjct: 232 WIAKLSVPCLLKALDENPSFKVQIVGHSLGGGTASLLTYILREQKEFASATCFTFAPAAC 291
Query: 306 MSWELAESGKEFVTSLINRNDVVPAFSKVSAENLRAEVMVSSKLDDEQDQA-HFSLFTAI 364
M+W+LAESGK F+T++IN +D+VP FS S ++LR+EV SS +D +DQ H + + +
Sbjct: 292 MTWDLAESGKHFITTIINGSDLVPTFSASSVDDLRSEVTSSSWSNDLRDQVEHTRVLSVV 351
Query: 365 SKRVAFIKSHMLSVSHPTEKNTD------PDSSISEPLLKHVPEITQPVTNGLST 413
+ I S + S++ K P SS ++ +LK ++ Q V ST
Sbjct: 352 YRSATAIGSRLPSIASAKAKVAGAGAILRPVSSGTQVMLKRAQDVAQAVVQTRST 406
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 510 SRQFFPPGRIIHMVAMASP------DPNPXXXXXXXXXXXXYETPRDLYGKIRLAPNMIK 563
+++F+PPG+I+H+V++ D YETPR+LY KIRL+ MI
Sbjct: 570 NQRFYPPGKIMHIVSVTETESETERDEVVVVGTTTVERVRIYETPRELYRKIRLSRTMIN 629
Query: 564 EHYMPSYISTMESLLEQL 581
+HYMP Y ME L+ +L
Sbjct: 630 DHYMPMYKKMMELLITEL 647
>AT3G14075.1 | chr3:4663819-4666338 REVERSE LENGTH=643
Length = 642
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/311 (44%), Positives = 207/311 (66%), Gaps = 3/311 (0%)
Query: 72 PSTCCEXXXXXXXXXXXXWDLTVGRWGLHGIAFGIKRHMKRQGDLQHE--YSGNDCLQLK 129
P+T E + T+G+W + +AFGI +KRQG L + + G D ++L+
Sbjct: 58 PATWLETISTLSETLRFTYSETLGKWPIGDLAFGINFLIKRQGLLHVDRVFGGKDSVELR 117
Query: 130 GHDAHTEVAYLLEHLKICMFYSKKTFSAFLQFGGYNQEDILIHKARARLMQPSFALVCDK 189
G + TE+ YLL L +C +SKK+F FL+ G+ +E++LIH+ +A +++P+F ++ D
Sbjct: 118 GSEVATELKYLLHLLTLCWHFSKKSFPFFLEETGFTKENVLIHEPKAGILKPAFTVLVDH 177
Query: 190 KSKCFLLFIRGAISTKERLTAATAAEVPFHHIVLSEGQISNVVLGYAHCGMLAAARWIAN 249
+K FLL IRG S K+ LTAAT A VPFHH V++E +SN+VLGYAHCGM+AAAR IA
Sbjct: 178 NTKYFLLLIRGTHSIKDTLTAATGAIVPFHHTVVNERGVSNLVLGYAHCGMVAAARCIAK 237
Query: 250 LAKPHLHKAVQEFPDYQIKVIGHSMGAGIGAILTYILHEHHEFSSCTCLAFAPPACMSWE 309
LA P L K ++++PDY+IK++GHS+G G A+LTYI+ E S+ TC+ FAP ACM+WE
Sbjct: 238 LATPCLLKGLEQYPDYKIKIVGHSLGGGTAALLTYIMREQKMLSTATCVTFAPAACMTWE 297
Query: 310 LAESGKEFVTSLINRNDVVPAFSKVSAENLRAEVMVSSKLDDEQDQ-AHFSLFTAISKRV 368
LA+SG +F+ S+IN D+VP FS + ++LRAEV S+ L+D ++Q H + + + +
Sbjct: 298 LADSGNDFIVSVINGADLVPTFSAAAVDDLRAEVTASAWLNDLRNQIEHTRILSTVYRSA 357
Query: 369 AFIKSHMLSVS 379
+ S + S++
Sbjct: 358 TALGSRLPSMA 368
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 510 SRQFFPPGRIIHMVAM--ASPDPNP-------------XXXXXXXXXXXXYETPRDLYGK 554
SR+F P G+I+H+V + + +PN + TPR LY K
Sbjct: 550 SRRFLPAGKIMHIVTVRPEAVEPNEEEDEDGSALERPETVETVEEGRVGIFLTPRSLYSK 609
Query: 555 IRLAPNMIKEHYMPSYISTMESLLEQL 581
+RL+ MI +H+MP Y +E L+++L
Sbjct: 610 VRLSQRMISDHFMPVYRRQIERLIQEL 636
>AT2G42450.1 | chr2:17672425-17674854 REVERSE LENGTH=547
Length = 546
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 24/189 (12%)
Query: 166 QEDILIHKARARLMQPSFALVCDKKSKCFLLFIRGAISTKERLT---AATAAEVPFHHIV 222
+ +IL + +M+P + + D + K + IRG + + +T +++ EV F
Sbjct: 214 ENNILKFVKDSSVMRPGYYIGVDHRRKLVVFGIRGTHTIYDLITDIVSSSDEEVTFE--- 270
Query: 223 LSEGQISNVVLGYA-HCGMLAAARWIANLAKPHLHKAVQEFPDYQIKVIGHSMGAGIGAI 281
GY+ H G AARW N + + + ++ Y+++++GHS+G I ++
Sbjct: 271 -----------GYSTHFGTAEAARWFLNHELQTIRRCLAKYEGYKLRLVGHSLGGAIASL 319
Query: 282 LTYIL----HEHHEFSS--CTCLAFAPPACMSWELAESGKEFVTSLINRNDVVPAFSKVS 335
+ +L E F + + + +A P C+S ELAE+ EFVT+++ ++D++P S S
Sbjct: 320 MAIMLKKMPREELGFDAEIISAVGYATPPCVSKELAENCSEFVTTIVMQDDIIPRLSAAS 379
Query: 336 AENLRAEVM 344
LR E++
Sbjct: 380 LARLRNEIL 388
>AT4G00500.1 | chr4:225214-226978 REVERSE LENGTH=461
Length = 460
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 234 GYAHCGMLAAARWIANLAKPHLHKAVQEFPDYQIKVIGHSMGAGIGAILTYILHEHH--- 290
GY H G+L AA W+ L + ++ P Y + +GHS+GAG+ ++L + ++
Sbjct: 139 GYVHNGLLKAAMWVFEEEHVVLRELLEANPSYSLTFVGHSLGAGVVSLLVLFVIQNRVRL 198
Query: 291 ---EFSSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVVP 329
E C A APP CMS LA + + + S++ ++D +P
Sbjct: 199 GNIERKRIRCFAIAPPRCMSLHLAVTYADVINSVVLQDDFLP 240
>AT3G49050.1 | chr3:18181498-18183613 FORWARD LENGTH=478
Length = 477
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 234 GYAHCGMLAAARWIANLAKPHLHKAVQEFPDYQIKVIGHSMGAGIGAILTYILHEHHE-- 291
GY H G++ +A ++ + L + V+++P Y + GHS+G+G+ +L ++ H E
Sbjct: 140 GYVHNGLVKSAGYVLDEECKVLKELVKKYPSYTLTFAGHSLGSGVATMLALLVVRHPERL 199
Query: 292 ----FSSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVVP 329
C A AP CMS LA + + S+I ++D +P
Sbjct: 200 GNIDRKRVRCFAIAPARCMSLNLAVRYADVINSVILQDDFLP 241
>AT5G37710.1 | chr5:14979159-14981400 FORWARD LENGTH=437
Length = 436
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 181 PSFALVCDKKSKCFLLFIRGAISTKERLTAATAAEVPFHHIVLSEGQISNVVLG--YAHC 238
P + + D + +L IRG KE + +L + ++ +LG Y H
Sbjct: 93 PPYIIYIDHDHREIVLAIRGLNLAKES-----------DYKILLDNKLGQKMLGGGYVHR 141
Query: 239 GMLAAARWIANLAKPHLHKAVQE-FPDYQIKVIGHSMGAGIGAILTYILHEHHEF----- 292
G+L +A W+ N L + +E +Y + GHS+G+G+ A++ ++
Sbjct: 142 GLLKSAAWVLNQESETLWRVWEENGREYDLVFAGHSLGSGVAALMAVLVVNTPAMIGDIP 201
Query: 293 -SSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVVP 329
+ C A AP CMS LA + ++S+I ++D +P
Sbjct: 202 RNKVRCFALAPARCMSLNLAVKYADVISSVILQDDFLP 239
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,470,345
Number of extensions: 462278
Number of successful extensions: 1246
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1238
Number of HSP's successfully gapped: 8
Length of query: 594
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 490
Effective length of database: 8,255,305
Effective search space: 4045099450
Effective search space used: 4045099450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)