BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0830200 Os03g0830200|Os03g0830200
(150 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G35525.1 | chr5:13707084-13707818 FORWARD LENGTH=153 122 8e-29
AT1G14870.1 | chr1:5128591-5129458 REVERSE LENGTH=153 122 8e-29
AT3G18460.1 | chr3:6333048-6333948 REVERSE LENGTH=185 111 2e-25
AT1G49030.1 | chr1:18136794-18137846 FORWARD LENGTH=225 109 6e-25
AT3G18470.1 | chr3:6335000-6335698 REVERSE LENGTH=134 107 3e-24
AT1G14880.1 | chr1:5132791-5133663 REVERSE LENGTH=152 106 4e-24
AT3G18450.1 | chr3:6331229-6332118 REVERSE LENGTH=185 105 1e-23
AT1G58320.1 | chr1:21634123-21635303 REVERSE LENGTH=149 94 3e-20
AT1G52200.1 | chr1:19442271-19443407 REVERSE LENGTH=191 90 5e-19
AT1G68610.1 | chr1:25763623-25764105 FORWARD LENGTH=161 87 2e-18
AT1G68630.1 | chr1:25768653-25769458 FORWARD LENGTH=162 87 3e-18
AT2G40935.1 | chr2:17083199-17084216 FORWARD LENGTH=191 59 1e-09
>AT5G35525.1 | chr5:13707084-13707818 FORWARD LENGTH=153
Length = 152
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 68/91 (74%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
ITFG+VA++VDRG+TSCGT GALY LL A TGC +YSC YRGK+R QY + GC DC
Sbjct: 39 ITFGQVADIVDRGNTSCGTAGALYVLLAAITGCGCLYSCIYRGKIRAQYNIRGDGCTDCL 98
Query: 102 VHFCCEPCALCQEYRELVARGYDPKLGWHLN 132
HFCCE CAL QEYREL RG+D LGW N
Sbjct: 99 KHFCCELCALTQEYRELKHRGFDMSLGWAGN 129
>AT1G14870.1 | chr1:5128591-5129458 REVERSE LENGTH=153
Length = 152
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 66/91 (72%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
ITFG+VAE+VDRGSTSCGT GALY L+ TGC IYSC YRGKMR QY + C DC
Sbjct: 39 ITFGQVAEIVDRGSTSCGTAGALYALIAVVTGCACIYSCFYRGKMRAQYNIKGDDCTDCL 98
Query: 102 VHFCCEPCALCQEYRELVARGYDPKLGWHLN 132
HFCCE C+L Q+YREL RGYD LGW N
Sbjct: 99 KHFCCELCSLTQQYRELKHRGYDMSLGWAGN 129
>AT3G18460.1 | chr3:6333048-6333948 REVERSE LENGTH=185
Length = 184
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
+T G++AE+VD G+T C TGG LYG++ F G ++YSC +R KMR +YGL +A D
Sbjct: 77 VTLGQIAEIVDEGATPCATGGLLYGMIF-FIGVPFVYSCMFRAKMRNKYGLPDAPAPDWI 135
Query: 102 VHFCCEPCALCQEYRELVARGYDPKLGW 129
H CE CALCQEYREL RG+DP +GW
Sbjct: 136 THLFCEHCALCQEYRELKHRGFDPNIGW 163
>AT1G49030.1 | chr1:18136794-18137846 FORWARD LENGTH=225
Length = 224
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 63/88 (71%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
+TFG++AE++D G+TSCGT G LYGL+C +Y+CT+R K+R++YGL +A D
Sbjct: 111 VTFGQIAEVIDEGATSCGTAGMLYGLICCLFAIPCVYTCTFRTKLRSKYGLPDAPAPDWI 170
Query: 102 VHFCCEPCALCQEYRELVARGYDPKLGW 129
H CE CALCQEYREL RG DP +GW
Sbjct: 171 THCFCEYCALCQEYRELKNRGLDPSIGW 198
>AT3G18470.1 | chr3:6335000-6335698 REVERSE LENGTH=134
Length = 133
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
+TFGR+A++ D G T CG G YGL+C G ++SCTYR K+R+++GL E+ +DC
Sbjct: 28 VTFGRIADISDEGRTGCGRCGVFYGLICCVVGLPCLFSCTYRTKIRSKFGLPESPTSDCV 87
Query: 102 VHFCCEPCALCQEYRELVARGYDPKLGWHLN 132
HF CE CALCQE+REL RG DP +GW N
Sbjct: 88 THFFCECCALCQEHRELKTRGLDPSIGWSGN 118
>AT1G14880.1 | chr1:5132791-5133663 REVERSE LENGTH=152
Length = 151
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 61/91 (67%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
ITFG+VAE+VDRGS SC GALY L+ T C +Y+C Y GKMR QY + GC DC
Sbjct: 38 ITFGQVAEIVDRGSKSCCAAGALYMLIDLITSCGRMYACFYSGKMRAQYNIKGDGCTDCL 97
Query: 102 VHFCCEPCALCQEYRELVARGYDPKLGWHLN 132
HFCC CAL Q+YREL RG+D LGW N
Sbjct: 98 KHFCCNLCALTQQYRELKHRGFDMSLGWAGN 128
>AT3G18450.1 | chr3:6331229-6332118 REVERSE LENGTH=185
Length = 184
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 1 MAKPSAAPVTGVPVG----SAAWSXXXXXXXXXXXXXXXXXXXXXITFGRVAEMVDRGST 56
+ KP+ P TG+PV WS +TFG++AE+VD G+T
Sbjct: 31 IGKPANIP-TGIPVNYQQTQNQWSSQLFDCMNDSENAVITLIAPCVTFGQIAEIVDEGAT 89
Query: 57 SCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCCVHFCCEPCALCQEYR 116
C T G LYG L FTG ++YS +R ++R ++GL +A D H C P ALCQEYR
Sbjct: 90 PCATAGLLYGALF-FTGASFVYSYMFRARIRKKFGLPDAPAPDWITHLVCMPFALCQEYR 148
Query: 117 ELVARGYDPKLGW 129
EL G+DP LGW
Sbjct: 149 ELKHHGFDPILGW 161
>AT1G58320.1 | chr1:21634123-21635303 REVERSE LENGTH=149
Length = 148
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
+ FGR+AE++D+G TS G G + + + GC W Y+ YR K+R QY L EA CAD
Sbjct: 41 VAFGRIAEILDKGETSRGLAGLMVVAMSSI-GCGWYYASKYRAKLRHQYALPEAPCADGA 99
Query: 102 VH-FCCEPCALCQEYRELVARGYDPKLGWHLN 132
+H FCC PCAL QE+REL RG DP LGW++
Sbjct: 100 IHCFCC-PCALTQEHRELKHRGLDPSLGWNIE 130
>AT1G52200.1 | chr1:19442271-19443407 REVERSE LENGTH=191
Length = 190
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
+TFG++AE++D G +C G +Y L+ W+ YR KMR ++ L EA +DC
Sbjct: 76 VTFGQIAEVMDEGEMTCPLGTFMYLLMMPALCSHWVMGSKYREKMRRKFNLVEAPYSDCA 135
Query: 102 VHFCCEPCALCQEYRELVARGYDPKLGWH 130
H C C+LCQEYREL R DP LGW+
Sbjct: 136 SHVLCPCCSLCQEYRELKIRNLDPSLGWN 164
>AT1G68610.1 | chr1:25763623-25764105 FORWARD LENGTH=161
Length = 160
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGC--QWIYSCTYRGKMRTQYGLAEAGCAD 99
+ FGR+AE+VDRGSTSCG GA+Y ++ TG +YSC YR K+R QY L E C D
Sbjct: 42 VAFGRIAEVVDRGSTSCGVSGAMYMIIFMLTGYGGSSLYSCFYRTKLRAQYNLKERPCCD 101
Query: 100 CCVHFCCEPCALCQEYRELV-ARGYDPKLGWHLN 132
CCVHFCCEPCALCQEYR+L R D +GWH N
Sbjct: 102 CCVHFCCEPCALCQEYRQLQHNRDLDLVIGWHGN 135
>AT1G68630.1 | chr1:25768653-25769458 FORWARD LENGTH=162
Length = 161
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 42 ITFGRVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCC 101
++F + E+V+RG+ C G ++ L F GC W+Y+ R ++R + L E C D
Sbjct: 52 VSFAQNVEIVNRGTIPCMNAGLIH-LALGFIGCSWLYAFPNRSRLREHFALPEEPCRDFL 110
Query: 102 VHFCCEPCALCQEYRELVARGYDPKLGWHLN 132
VH C PCA+CQE REL RG DP +GW N
Sbjct: 111 VHLFCTPCAICQESRELKNRGADPSIGWLSN 141
>AT2G40935.1 | chr2:17083199-17084216 FORWARD LENGTH=191
Length = 190
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 59 GTGGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCCVHFCCEPCALCQEYREL 118
T GAL GL F C Y+C YR +R +Y L EA C D HF C CA+CQEYRE+
Sbjct: 105 ATNGALLGLPGCFVSC---YACGYRKSLRAKYNLQEAPCGDFVTHFFCHLCAICQEYREI 161
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,767,670
Number of extensions: 91099
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 13
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)