BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0828300 Os03g0828300|AK107037
(189 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G66460.1 | chr5:26538911-26540837 REVERSE LENGTH=432 151 2e-37
AT3G10890.1 | chr3:3407455-3409000 REVERSE LENGTH=415 145 8e-36
AT3G10900.1 | chr3:3410252-3412070 REVERSE LENGTH=409 141 2e-34
AT5G01930.1 | chr5:361189-362867 REVERSE LENGTH=449 135 9e-33
AT1G02310.1 | chr1:458243-460652 REVERSE LENGTH=412 127 3e-30
AT4G28320.1 | chr4:14018293-14019972 REVERSE LENGTH=432 124 2e-29
AT2G20680.1 | chr2:8921024-8923066 FORWARD LENGTH=434 122 2e-28
AT3G30540.1 | chr3:12144792-12146475 REVERSE LENGTH=330 80 6e-16
>AT5G66460.1 | chr5:26538911-26540837 REVERSE LENGTH=432
Length = 431
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 37 GTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGD 96
G QF + G Y +GFNAYWLM + GL +ARTWAFSDGG
Sbjct: 36 GVQFSLNG-YPYYANGFNAYWLMYVASDPSQRSKISTAFQDASRHGLTVARTWAFSDGGY 94
Query: 97 QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNL 156
+ LQ SPG Y+E MFQGLDF +AEARRHGI ++L NN++ FGG++QYV WA G +
Sbjct: 95 RALQYSPGSYNEDMFQGLDFALAEARRHGIKIILSFANNYESFGGRKQYVDWARSRGRPV 154
Query: 157 TAGDDFFTSSVVKSYYKNHVKVRHNRY 183
++ DDFFT S+VK +YKNH+K NR+
Sbjct: 155 SSEDDFFTDSLVKDFYKNHIKAVLNRF 181
>AT3G10890.1 | chr3:3407455-3409000 REVERSE LENGTH=415
Length = 414
Score = 145 bits (367), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Query: 37 GTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGD 96
G QF++ G+ Y +GFNAYWL L + RTW F DGG
Sbjct: 36 GVQFIL-NGKPFYANGFNAYWLAYEATDSTTRFKITYVFQNATIHDLTIVRTWGFRDGGY 94
Query: 97 QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNL 156
+ LQ +PGVYDE FQGLDF IAEA+R GI +++ NN+ DFGG++QYV WA + G N+
Sbjct: 95 RALQIAPGVYDEKTFQGLDFAIAEAKRLGIKMIITFVNNYSDFGGRKQYVDWAKNTGQNV 154
Query: 157 TAGDDFFTSSVVKSYYKNHVKVRHNR 182
++ DDF+T+ +VK YYKNHVK NR
Sbjct: 155 SSDDDFYTNPLVKQYYKNHVKTMVNR 180
>AT3G10900.1 | chr3:3410252-3412070 REVERSE LENGTH=409
Length = 408
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 36 DGTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGG 95
+G QF++ G + Y +GFNAYWL GL +ARTW F DG
Sbjct: 33 NGVQFILNG-KPFYANGFNAYWLAYEATDPTTRFKITNVFQNATSLGLTIARTWGFRDGA 91
Query: 96 D-QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGH 154
+ LQ++PG YDE FQGLDFVIAEA+R GI L++ L NN+DD+GGK+QYV WA G
Sbjct: 92 IYRALQTAPGSYDEQTFQGLDFVIAEAKRIGIKLIILLVNNWDDYGGKKQYVDWARSKGE 151
Query: 155 NLTAGDDFFTSSVVKSYYKNHVKVRHNR 182
+++ DDF+ + V+K +YKNHVK NR
Sbjct: 152 VVSSNDDFYRNPVIKDFYKNHVKTVLNR 179
>AT5G01930.1 | chr5:361189-362867 REVERSE LENGTH=449
Length = 448
Score = 135 bits (341), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 37 GTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGGD 96
G QF + G+ Y +GFN YW+M + G+ + RTWAF+DG
Sbjct: 52 GMQFTL-NGQPFYVNGFNTYWMMTLAADNSTRGKVTEVFQQASAVGMTVGRTWAFNDGQW 110
Query: 97 QPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNL 156
+ LQ SP VYDE +F+ LDFV++EAR++ I L+L L NN+D +GGK QYV+W +G NL
Sbjct: 111 RALQKSPSVYDEEVFKALDFVLSEARKYKIRLILSLVNNWDAYGGKAQYVKWGNASGLNL 170
Query: 157 TAGDDFFTSSVVKSYYKNHVKVRHNR 182
T+ DDFFT+ ++++Y++HV+ NR
Sbjct: 171 TSDDDFFTNPTLRNFYQSHVRTVLNR 196
>AT1G02310.1 | chr1:458243-460652 REVERSE LENGTH=412
Length = 411
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 88/149 (59%), Gaps = 8/149 (5%)
Query: 36 DGTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXX--XXXXXXXXXXXXXGLNLARTWAFSD 93
+GTQFV+ G +Y +GFNAYW+M G+N+AR W F++
Sbjct: 33 NGTQFVLNG-EQVYLNGFNAYWMMTTAADTASKGRATVTTALRQASAVGMNVARIWGFNE 91
Query: 94 GGDQPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAG 153
G PLQ SPG Y E +F+GLDFV+ EA R I L++ L NNF+D+GG+++YV WA
Sbjct: 92 GDYIPLQISPGSYSEDVFKGLDFVVYEAGRFNIKLIISLVNNFEDYGGRKKYVEWAG--- 148
Query: 154 HNLTAGDDFFTSSVVKSYYKNHVKVRHNR 182
L D+F+T+S VK +YKNHVK R
Sbjct: 149 --LDEPDEFYTNSAVKQFYKNHVKTVLTR 175
>AT4G28320.1 | chr4:14018293-14019972 REVERSE LENGTH=432
Length = 431
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 89/148 (60%), Gaps = 2/148 (1%)
Query: 36 DGTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGG 95
+GTQFVV+ + +Y +G+N+YW M GL + RTWAF+DGG
Sbjct: 45 NGTQFVVDD-KPLYVNGWNSYWFMDHAVDEHSRNLVGEMLEAGAKMGLTVCRTWAFNDGG 103
Query: 96 DQPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHN 155
LQ SPG +DE +FQ LD VIAEAR+H + LLL L NN +GGK QYV+WA G
Sbjct: 104 YNALQISPGRFDERVFQALDHVIAEARKHDVRLLLSLVNNLQAYGGKTQYVKWAWQEGVG 163
Query: 156 LTAGDD-FFTSSVVKSYYKNHVKVRHNR 182
L++ +D FF +++Y+KN++KV R
Sbjct: 164 LSSSNDSFFFDPSIRNYFKNYLKVLLTR 191
>AT2G20680.1 | chr2:8921024-8923066 FORWARD LENGTH=434
Length = 433
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
Query: 36 DGTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGG 95
+GTQFVV+G + +Y +G+N+YW M GL + RTWAF+DGG
Sbjct: 46 NGTQFVVDG-KALYVNGWNSYWFMDHAVNDHSRHRVSAMLEAGAKMGLTVCRTWAFNDGG 104
Query: 96 DQPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHN 155
LQ SPG +DE +F+ LD VIAEA+ HG+ LLL L NN +GGK QYV WA G
Sbjct: 105 YNALQISPGRFDERVFKALDHVIAEAKTHGVRLLLSLVNNLQAYGGKTQYVNWAWQEGVG 164
Query: 156 LTAGDD-FFTSSVVKSYYKNHVKVRHNR 182
L++ +D FF ++ Y+KN++ V R
Sbjct: 165 LSSSNDSFFFDPSIRRYFKNYLTVLLTR 192
>AT3G30540.1 | chr3:12144792-12146475 REVERSE LENGTH=330
Length = 329
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 38/147 (25%)
Query: 36 DGTQFVVEGGRTIYFSGFNAYWLMMMXXXXXXXXXXXXXXXXXXXXGLNLARTWAFSDGG 95
+G QF++ G+ Y +GFNAYWL A+
Sbjct: 33 NGVQFIL-NGKPFYANGFNAYWL-------------------------------AYEATD 60
Query: 96 DQPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHN 155
V+ A +AEA+R GI L++ L NN+DD+GGK+QYV WA G
Sbjct: 61 PATRFKITNVFQNAT------SLAEAKRVGIKLIIPLVNNWDDYGGKKQYVDWARSKGEM 114
Query: 156 LTAGDDFFTSSVVKSYYKNHVKVRHNR 182
+++ DDF+ + V+K +YKNHVK NR
Sbjct: 115 VSSNDDFYRNPVIKEFYKNHVKTMLNR 141
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,305,213
Number of extensions: 113931
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 8
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)