BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0827500 Os03g0827500|AK067674
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15330.1 | chr5:4980595-4982043 FORWARD LENGTH=319 269 1e-72
AT5G20150.1 | chr5:6802429-6803367 FORWARD LENGTH=257 157 5e-39
AT2G45130.1 | chr2:18606489-18607754 FORWARD LENGTH=246 152 1e-37
AT2G26660.1 | chr2:11338932-11340703 FORWARD LENGTH=288 151 5e-37
AT3G23430.1 | chr3:8387818-8393242 REVERSE LENGTH=783 49 2e-06
>AT5G15330.1 | chr5:4980595-4982043 FORWARD LENGTH=319
Length = 318
Score = 269 bits (687), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/316 (48%), Positives = 185/316 (58%), Gaps = 67/316 (21%)
Query: 1 MKFGKDFRSHLEETLPAWRD------------KYLAYKS--------------------- 27
MKFGK+FR+HLEETLP WRD KY Y S
Sbjct: 1 MKFGKEFRTHLEETLPEWRDKFLCYKPLKKLLKYYPYYSADFGPANSDHNDSRPVFADTT 60
Query: 28 ----------------------------LKKLIKKLNDFYIEREEWYVIRLQVLKERIER 59
L ++K NDFY+++EE +VIRLQ LKERIE+
Sbjct: 61 NISSAADDGGVVPGVRPSEDLQGSFVRILNDELEKFNDFYVDKEEDFVIRLQELKERIEQ 120
Query: 60 VKAKKNGAFTSKSEFTEEMLEIRKAFVIIHGEMILLQTYSSLNFAGLVKILKKYDKRTGG 119
VK +KNG F S+SEF+EEM++IR+ V IHGEM+LL+ YSSLNFAGLVKILKKYDKRTGG
Sbjct: 121 VK-EKNGEFASESEFSEEMMDIRRDLVTIHGEMVLLKNYSSLNFAGLVKILKKYDKRTGG 179
Query: 120 LLSLPFTQRARHQPFFTTEPLTRLVRECEANLELLFP----IXXXXXXXXXXXXKLQPQN 175
LL LPFTQ HQPFFTTEPLTRLVRECEANLELLFP + Q N
Sbjct: 180 LLRLPFTQLVLHQPFFTTEPLTRLVRECEANLELLFPSEAEVVESSSAVQAHSSSHQ-HN 238
Query: 176 DDAASHDPASSVDVETSDVYRSTLAAMKAIQGLRKASSTYNPLSLARFFHGEDGEACSGA 235
S + +S++ E D+Y+STLAAM+AI+GL+KASSTYNPLS + ED E +
Sbjct: 239 SPRISAETSSTLGNENLDIYKSTLAAMRAIRGLQKASSTYNPLSFSSLLQNEDDETVTAE 298
Query: 236 ITSESDSYSDSQIEDA 251
+ S + DS+ ED
Sbjct: 299 NSPNSGNKDDSEKEDT 314
>AT5G20150.1 | chr5:6802429-6803367 FORWARD LENGTH=257
Length = 256
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 137/259 (52%), Gaps = 65/259 (25%)
Query: 1 MKFGKDFRSHLEETLPAWRDKYLAYKSLKKLIK--------------------------- 33
MKFGK + +E+TLP W+DK+L+YK LKK +K
Sbjct: 1 MKFGKSLSNQIEQTLPEWQDKFLSYKELKKRLKLIGSKTADRPVKRLRLDEFSVGISKEE 60
Query: 34 ------------KLNDFYIEREEWYVIRLQVLKERIERVKAKKNGAFTSKSEFTEEMLEI 81
K N+F++E+EE Y+IRL+ ++RI + K + E+M++I
Sbjct: 61 INFIQLLEDELEKFNNFFVEKEEEYIIRLKEFRDRIAKAK-----------DSMEKMIKI 109
Query: 82 RKAFVIIHGEMILLQTYSSLNFAGLVKILKKYDKRTGGLLSLPFTQRARHQPFFTTEPLT 141
RK V HGEM+LL+ YS+LN+ GLVKILKKYDKRTG L+ LPF Q+ QPF+TT+ L
Sbjct: 110 RKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGDLMRLPFIQKVLQQPFYTTDLLF 169
Query: 142 RLVRECEANLELLFPIXXXXXXXXXXXXKLQPQNDDAASHDPASSVDVETSDVYRSTLAA 201
+LV+E EA L+ +FP + + H S+ + +ST+AA
Sbjct: 170 KLVKESEAMLDQIFPANETESEIIQA---------ELSEHKFMESLHM------KSTIAA 214
Query: 202 MKAIQGLRKASSTYNPLSL 220
++ ++ +R SST + SL
Sbjct: 215 LRVLKEIRSGSSTVSVFSL 233
>AT2G45130.1 | chr2:18606489-18607754 FORWARD LENGTH=246
Length = 245
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 135/240 (56%), Gaps = 39/240 (16%)
Query: 1 MKFGKDFRSHLEETLPAWRDKYLAYKSLKKLIK------------------KLNDFYIER 42
MKFGK + ++E+LP WRDK+L YK LK LI K N F++E+
Sbjct: 1 MKFGKRIKEQIQESLPEWRDKFLRYKELKNLISSPAPVESIFVGLLNAEIDKFNAFFVEQ 60
Query: 43 EEWYVIRLQVLKERIERVKAKKNGAFTSKSEFTEEMLEIRKAFVIIHGEMILLQTYSSLN 102
EE ++I + L+ RI+R+ +K G S E + EIRK V HGEM+LL YS++N
Sbjct: 61 EEDFIIHHKELQYRIQRL-VEKCGHNDEMSR--ENISEIRKDIVNFHGEMVLLVNYSNIN 117
Query: 103 FAGLVKILKKYDKRTGGLLSLPFTQRARHQPFFTTEPLTRLVRECEANLELLFPIXXXXX 162
+ GL KILKKYDKRT G L PF Q+ HQPFF T+ ++RLVRE E ++ + P+
Sbjct: 118 YTGLAKILKKYDKRTRGGLRSPFIQKVLHQPFFKTDLVSRLVREWETTMDAVDPVKVA-- 175
Query: 163 XXXXXXXKLQPQNDDAASHDPASSVDVETS--DVYRSTLAAMKAIQGLRKASSTYNPLSL 220
+A ++ ++V + ++R+T+AA+ ++ +R+ SSTY+ SL
Sbjct: 176 --------------EAEGYERCAAVTSAAAGEGIFRNTVAALLTMKEMRRGSSTYSAFSL 221
>AT2G26660.1 | chr2:11338932-11340703 FORWARD LENGTH=288
Length = 287
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 134/273 (49%), Gaps = 64/273 (23%)
Query: 1 MKFGKDFRSHLEETLPAWRDKYLAYKS--------------------------------- 27
MKFGK + +EETLP WRDK+L+YK
Sbjct: 1 MKFGKSLSNQIEETLPEWRDKFLSYKELKKKLKLMEPRSVENRPNKRSRSDSNSVDTDPT 60
Query: 28 -------------LKKLIKKLNDFYIEREEWYVIRLQVLKERIERVKAKKNGAFTSKSEF 74
L+ ++K N F++E+EE Y+IRL+ LK+++ + K
Sbjct: 61 VGMTKEELDFISLLEDELEKFNSFFVEQEEEYIIRLKELKDQVAKAKNS----------- 109
Query: 75 TEEMLEIRKAFVIIHGEMILLQTYSSLNFAGLVKILKKYDKRTGGLLSLPFTQRARHQPF 134
EEM+ I+K V HGEM+LL YS+LN+ GL KILKKYDKRTG L+ LPF Q+ +PF
Sbjct: 110 NEEMINIKKEIVDFHGEMVLLMNYSALNYTGLAKILKKYDKRTGALIRLPFIQKVLQEPF 169
Query: 135 FTTEPLTRLVRECEANLELLFPIXXXXXXXX----XXXXKLQPQNDDAA---SHDPASSV 187
FTT+ L V+ECEA L+ LFP ++ DD+ S +
Sbjct: 170 FTTDLLNTFVKECEAMLDRLFPSNKSRNLDEEGEPTTSGMVKTGTDDSELLRVPKELSEI 229
Query: 188 DVETSDVYRSTLAAMKAIQGLRKASSTYNPLSL 220
+ S +ST++A+K ++ +R SST + SL
Sbjct: 230 EYMESLYMKSTVSALKVLKEIRSGSSTVSVFSL 262
>AT3G23430.1 | chr3:8387818-8393242 REVERSE LENGTH=783
Length = 782
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 80 EIRKAFVIIHGEMILLQTYSSLNFAGLVKILKKYDKRTGGLLSLPFTQRARHQPFFTTEP 139
+IR AFV ++ + LL+TYSSLN KI+KK+DK G S + + + F +++
Sbjct: 287 KIRSAFVELYRGLGLLKTYSSLNMIAFTKIMKKFDKVAGQNASSTYLKVVKRSQFISSDK 346
Query: 140 LTRLVRECEA 149
+ RL+ E E+
Sbjct: 347 VVRLMDEVES 356
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,532,338
Number of extensions: 211011
Number of successful extensions: 1232
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1224
Number of HSP's successfully gapped: 7
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)