BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0825600 Os03g0825600|AK063312
(317 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58960.1 | chr5:23805799-23808360 FORWARD LENGTH=560 227 6e-60
AT2G45260.1 | chr2:18664661-18665938 REVERSE LENGTH=426 125 2e-29
AT3G14870.1 | chr3:5004159-5005586 FORWARD LENGTH=476 91 9e-19
AT1G29300.1 | chr1:10248120-10249499 REVERSE LENGTH=460 82 3e-16
AT1G53380.1 | chr1:19913341-19914702 REVERSE LENGTH=454 79 4e-15
AT3G60680.1 | chr3:22430246-22431745 FORWARD LENGTH=500 69 4e-12
>AT5G58960.1 | chr5:23805799-23808360 FORWARD LENGTH=560
Length = 559
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 182/317 (57%), Gaps = 27/317 (8%)
Query: 24 YEAALDDLRRQLQAKQAEVDGLKEKLAVAS--NRRNSRHH----PSKHNASGGGGGAPTX 77
YEA + +L+++++ K E++ LKEK+ VAS N + H K N + +P
Sbjct: 242 YEAVVKELKKEVKVKDTEIENLKEKVKVASMANGNGGKKHRLLSSRKVNCTTQIAVSPVP 301
Query: 78 XXXXXXXXXXXXXXXXXXGHLLQLMRAAGLDLAAATRSLTKIPVSSP------------- 124
G LL LMRAA D+AAA RS+ SS
Sbjct: 302 ELFEMTMIQVKEASKSFTGILLSLMRAAHWDIAAAVRSIEAASASSDGMSASSFASSVQS 361
Query: 125 ----QLAKHALEAHVTRVLLVGFEHESFYLDGSLSSLLDPAAFRRERYTQFRDMRGMEPA 180
Q AK ALE+++ R + GF+HE+FY+DGSLSSL++P +RR+ + QF+DM+ M+P
Sbjct: 362 SVPNQHAKFALESYICRKIFQGFDHETFYMDGSLSSLINPDQYRRDCFAQFKDMKAMDPM 421
Query: 181 ELLGLLPTCPFGRYAASKFAALLPPRVEQAVLGDGEHRRAVEGGAHPRTPFYGEFLRAAK 240
ELLG+LPTC FG++ + K+ +++ ++E+++ GD E R V G HPR+ FYGEFL AK
Sbjct: 422 ELLGILPTCHFGKFCSKKYLSIIHQKMEESLFGDSEQRELVVAGNHPRSQFYGEFLGLAK 481
Query: 241 AVWMLHLLAFALETPPSHFEAGRGAEFHPDYMESXXXXXXXXX-XXXXXXXXXXXXFRL- 298
AVW+LHLLAF+L+ PSHFEA RGAEFH YMES F+L
Sbjct: 482 AVWLLHLLAFSLDPSPSHFEANRGAEFHSQYMESVVRFSDGRVPAGQVVGFPVCPGFKLS 541
Query: 299 --GNGAVVRARVYLVPR 313
G G+++++RVYLVPR
Sbjct: 542 HQGKGSIIKSRVYLVPR 558
>AT2G45260.1 | chr2:18664661-18665938 REVERSE LENGTH=426
Length = 425
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 21/303 (6%)
Query: 24 YEAALDDLRRQLQAKQAEVDGLKEKLAVASNRR-----NSRHHPSKHNASGGGGGAPTXX 78
YE + + ++Q K +E+ + +K+ A+ +R N + N G G
Sbjct: 121 YEVMVKKFQSEIQNKDSEITQMLQKIEEANQKRLKLEKNLKLRGMSTNEGSNGDGNMQFP 180
Query: 79 XXXXXXXXXXXXXXXXXGH-----LLQLMRAAGLDLAAATRSLTKIPVSSPQ-LAKHALE 132
H L+ +M+AAG DL +A S+ V + + K+A E
Sbjct: 181 DLTTELYVSTYEAAAKAVHDFSKPLINMMKAAGWDLDSAANSIEPDVVYAKRPHKKYAFE 240
Query: 133 AHVTRVLLVGFEHESFYLDGSLSSLL---DPAAFRRERYTQFRDMRGMEPAELLGLLPTC 189
+++ + + GF+ ++F ++ ++++ D F R QF ++ M+P + LG P
Sbjct: 241 SYICQRMFSGFQQKNFSVNSESAAVMANDDTDTFFR----QFLALKDMDPLDALGTNPDS 296
Query: 190 PFGRYAASKFAALLPPRVEQAVLGDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLA 249
FG + SK+ L+ P++E + G+ + R V GG HPRT FY FL+ AK++W+LH LA
Sbjct: 297 NFGIFCRSKYLLLVHPKMEASFFGNLDQRDYVTGGGHPRTAFYQAFLKLAKSIWILHRLA 356
Query: 250 FALETPPSHFEAGRGAEFHPDYMESXXXXXXXXXXXXXXXXXXXXX--FRLGNGAVVRAR 307
++ + F+ +G+EF YMES F +G G+V+++R
Sbjct: 357 YSFDPAAKIFQVKKGSEFSDSYMESVVKNIVVDEKEENPRVGLMVMPGFWIG-GSVIQSR 415
Query: 308 VYL 310
VY+
Sbjct: 416 VYV 418
>AT3G14870.1 | chr3:5004159-5005586 FORWARD LENGTH=476
Length = 475
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 130 ALEAHVTRVLLVGFEHESFYLDGSLSSLLDPAAFRRERYTQFRDMRGMEPAELLGLLPTC 189
ALE +V +++L F+ F + S + + A ER+T ++R M+P E L P
Sbjct: 281 ALEHYVCKIMLEAFQLPYFSNESSKKTSREDKAMFFERFT---ELRSMKPREYLASRPKS 337
Query: 190 PFGRYAASKFAALLPPRVEQAVLGDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLA 249
++ +K+ L+ P++EQA G R V G P T FL AK VW+LH LA
Sbjct: 338 RLAKFCRTKYLQLIHPKMEQAFFGHLHQRNQVTAGEFPETSLCTAFLEMAKRVWLLHCLA 397
Query: 250 FALETPPSHFEAGRGAEFHPDYMES 274
F+ + S F+ RG F YM+S
Sbjct: 398 FSFDPEASIFQVSRGCRFSEVYMKS 422
>AT1G29300.1 | chr1:10248120-10249499 REVERSE LENGTH=460
Length = 459
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 143 FEHESFYLDGSLSSLLDPAAFRRERYTQFRDMRGMEPAELLGLLPTCPFGRYAASKFAAL 202
F ESF + P RRE +F +R ++P + L P F R+ K+ ++
Sbjct: 284 FAFESFVCGKMFENFGAPDFSRRE---EFEKLRSVDPIQYLTRNPGSSFARFVVHKYLSV 340
Query: 203 LPPRVEQAVLGDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAG 262
+ ++E + G+ R+ V G P + F+ F AK +W+LH LAF+L + F+
Sbjct: 341 VHAKMECSFFGNLNQRKLVNSGGFPDSGFFATFCEMAKRIWLLHCLAFSLSGNVTVFQLK 400
Query: 263 RGAEFHPDYMESXXXXXXXXXXXXXXXXXXXXX----FRLGNGAVVRARVYLVPRGG 315
RG F YMES F++G V++++VYL P G
Sbjct: 401 RGCRFSQVYMESVKSGDESLFSGDNSDIRVGFTVVPGFKIGEN-VIQSQVYLTPVNG 456
>AT1G53380.1 | chr1:19913341-19914702 REVERSE LENGTH=454
Length = 453
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 6/182 (3%)
Query: 98 LLQLMRAAGLDLAAATRSLTKIPVSSPQLAK-HALEAHVTRVLLVGFEHESFYLDGSLSS 156
+++ M+ AG D+++A S+ Q K E V+ V+ F H ++ S S
Sbjct: 229 MIEQMKLAGWDISSAANSIHPGVFYYKQDHKCFTFEHFVSNVMFEAF-HLPYFSTSSESR 287
Query: 157 LLDPA----AFRRERYTQFRDMRGMEPAELLGLLPTCPFGRYAASKFAALLPPRVEQAVL 212
A R + +F+++R M+ + L P F R+ +K+ L+ P++EQA
Sbjct: 288 SYKKKKQSNADREMFFERFKELRSMKAKDYLTARPKSRFARFCRAKYLQLIHPKMEQAFF 347
Query: 213 GDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAGRGAEFHPDYM 272
G R V G P T + FL AK +W+LH LA + E F +G F YM
Sbjct: 348 GHLHLRNQVSAGEFPETSLFSGFLEMAKRIWLLHCLALSFEREAEIFRVPKGCRFSEVYM 407
Query: 273 ES 274
+S
Sbjct: 408 KS 409
>AT3G60680.1 | chr3:22430246-22431745 FORWARD LENGTH=500
Length = 499
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 98 LLQLMRAAGLDLAAATRSL-TKIPVSSPQLAKHALEAHVTRVLLVGFEHESFYLDGSLSS 156
L++LM AG DL +S+ ++ + + ++AL ++V + GF+ E F L+
Sbjct: 277 LIELMEKAGWDLDLVAKSVHPEVDYAKERHNRYALLSYVCLGMFRGFDGEGFDLN----- 331
Query: 157 LLDPAAFRRERYTQFRDMRGM------EPAELLGLLPTCPFGRYAASKFAALLPPRVEQA 210
+ ER + +R + P ELL C F R+ K+ L+ P + +
Sbjct: 332 --ENDYEESERSSVDSSLRELMQHVSSNPMELLDRDKDCAFSRFCDKKYHELIHPNMASS 389
Query: 211 VLGDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAGRGAEFHPD 270
+ + + AV + FY F+ A ++W LH LA + + F+ G EF
Sbjct: 390 IFSNMDENEAVLSSWRSLSTFYESFVTMASSIWTLHKLALSFDPAVEIFQVESGVEFSIV 449
Query: 271 YMES 274
+ME+
Sbjct: 450 FMEN 453
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,474,046
Number of extensions: 198616
Number of successful extensions: 554
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)