BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0821800 Os03g0821800|AK102290
         (352 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39630.1  | chr2:16522008-16524561 REVERSE LENGTH=337          413   e-116
AT1G20575.1  | chr1:7126987-7128677 REVERSE LENGTH=247             53   3e-07

>AT2G39630.1 | chr2:16522008-16524561 REVERSE LENGTH=337
          Length = 336

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/312 (62%), Positives = 240/312 (76%), Gaps = 5/312 (1%)

Query: 42  FEHIRKIGCTHSLERTEVSAAFFEDPNSLNKVRCPSIYDPAEKYISLIIPAYNEEHRLPE 101
           FE  R+     S+E    +    +DP S+  + CP I DPAEKY+SLI+PAYNEE RLP 
Sbjct: 28  FEAWRRRHSNVSVE----TVTTLDDPKSIKPIPCPHITDPAEKYLSLIVPAYNEELRLPA 83

Query: 102 ALTETLNYLKQRSAVEKSFTYEVLIVDDGSTDHTSKVAFEFVRKHKIDNVRVLLLGRNHG 161
           AL ET++YL+ R++ +KSF++EV+IVDDGS D T +VAF+F+RK+ IDN+RV+ LG+N G
Sbjct: 84  ALEETMDYLQDRASRDKSFSFEVVIVDDGSVDGTKRVAFDFIRKYTIDNIRVIPLGKNQG 143

Query: 162 KGEAVRKGMLHSRGELLLMLDADGATKVTDLEKLEAQVRXXXXXXXXXXXXXXXXXQ-RL 220
           KGEA+RKGMLHSRG+LLLMLDADGATKVTDLEKLE Q+                    ++
Sbjct: 144 KGEAIRKGMLHSRGQLLLMLDADGATKVTDLEKLENQINAVAREEYSIRNPASKDMDFKI 203

Query: 221 SDAEIAVFGSRAHLEKQALATRKWYRNFLMKGFHLVVLLTAGPGIRDTQCGFKMFTRAAA 280
            D +++ FGSRAHLE++ALATRKWYRNFLMKGFHLVVLL AGPGIRDTQCGFKMFTRAAA
Sbjct: 204 GDVQVSAFGSRAHLEEKALATRKWYRNFLMKGFHLVVLLAAGPGIRDTQCGFKMFTRAAA 263

Query: 281 RKLFTNIRLKRWCFDVELVYLCKHLRIPMAEVSVNWTEIPGSKVRMTSILHMVFELLLIK 340
           R+LFTN+ LKRWCFDVELVYLCK   IPM E+SV W+EIPGSKV M SI +M++EL L+ 
Sbjct: 264 RRLFTNVHLKRWCFDVELVYLCKRFNIPMVEISVKWSEIPGSKVSMLSIPNMLWELALMS 323

Query: 341 VGYGLSIWKIYS 352
           VGY   +WKI+ 
Sbjct: 324 VGYRTGMWKIHQ 335



>AT1G20575.1 | chr1:7126987-7128677 REVERSE LENGTH=247
          Length = 246

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 101/232 (43%), Gaps = 28/232 (12%)

Query: 87  SLIIPAYNEEHRLPEALTETLNYLKQRSAVEKSFTYEVLIVDDGSTDHTSKVAFEFVRKH 146
           S+IIP YNE  RL  A+   L +   R        +E+++VDDGS D T ++  +  + +
Sbjct: 16  SIIIPTYNE--RLNIAIIVYLIFKHLRDV-----DFEIIVVDDGSPDGTQEIVKQLQQLY 68

Query: 147 KIDNVRVLLLGRNHGKGEAVRKGMLHSRGELLLMLDADGATKVTDLEKLEAQVRXXXXXX 206
             D + +    +  G G A   G+ H+ G+ ++++DAD +     L     +        
Sbjct: 69  GEDRILLRARAKKLGLGTAYIHGLKHATGDFVVIMDADLSHHPKYLPSFIKK-------- 120

Query: 207 XXXXXXXXXXXQRLSDAEIAVFGSRAHLEKQALATRKWYRNFLMKGFHLVVLLTAGPGIR 266
                      Q  ++A I V G+R +++   +      R    +G +++      PG+ 
Sbjct: 121 -----------QLETNASI-VTGTR-YVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVS 167

Query: 267 DTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKHLRIPMAEVSVNWTE 318
           D    F+++ ++A   + ++   K + F +E++         + EV + + +
Sbjct: 168 DLTGSFRLYKKSALEDVISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVD 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,317,138
Number of extensions: 233659
Number of successful extensions: 674
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,364,969
Effective search space: 2107972188
Effective search space used: 2107972188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 112 (47.8 bits)