BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0818400 Os03g0818400|AK102675
         (142 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02960.1  | chr5:693280-694396 REVERSE LENGTH=143              274   1e-74
AT3G09680.1  | chr3:2969197-2970291 REVERSE LENGTH=143            263   2e-71
ATCG00905.1  | chrC:97999-98793 REVERSE LENGTH=124                 52   1e-07
ATCG01230.1  | chrC:139856-140650 FORWARD LENGTH=124               52   1e-07
ATCG00065.1  | chrC:69611-69724 REVERSE LENGTH=124                 52   1e-07

>AT5G02960.1 | chr5:693280-694396 REVERSE LENGTH=143
          Length = 142

 Score =  274 bits (700), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/142 (95%), Positives = 138/142 (97%)

Query: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R NQRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQL+KNGKKIAAFVPNDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142



>AT3G09680.1 | chr3:2969197-2970291 REVERSE LENGTH=143
          Length = 142

 Score =  263 bits (673), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 132/142 (92%), Positives = 135/142 (95%)

Query: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQL+KNGKKIAAFVPNDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142



>ATCG00905.1 | chrC:97999-98793 REVERSE LENGTH=124
          Length = 123

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNF 92
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLT-SGFEITAYIPGIG--HN 73

Query: 93  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
           ++E+  VL+ G GR    V D+PGVR+ +V+
Sbjct: 74  LQEHSVVLVRG-GR----VKDLPGVRYHIVR 99



>ATCG01230.1 | chrC:139856-140650 FORWARD LENGTH=124
          Length = 123

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNF 92
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLT-SGFEITAYIPGIG--HN 73

Query: 93  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
           ++E+  VL+ G GR    V D+PGVR+ +V+
Sbjct: 74  LQEHSVVLVRG-GR----VKDLPGVRYHIVR 99



>ATCG00065.1 | chrC:69611-69724 REVERSE LENGTH=124
          Length = 123

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNF 92
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLT-SGFEITAYIPGIG--HN 73

Query: 93  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
           ++E+  VL+ G GR    V D+PGVR+ +V+
Sbjct: 74  LQEHSVVLVRG-GR----VKDLPGVRYHIVR 99



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,351,971
Number of extensions: 135041
Number of successful extensions: 276
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 5
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)