BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0817000 Os03g0817000|AK104998
(443 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38440.1 | chr2:16095550-16100851 FORWARD LENGTH=1400 99 4e-21
AT5G01730.1 | chr5:273019-277561 REVERSE LENGTH=1171 76 4e-14
AT2G34150.2 | chr2:14419432-14423259 REVERSE LENGTH=822 56 5e-08
AT1G29170.1 | chr1:10190352-10194900 REVERSE LENGTH=1021 52 7e-07
>AT2G38440.1 | chr2:16095550-16100851 FORWARD LENGTH=1400
Length = 1399
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Query: 341 PRNPLVDAVAAHDRSTMRKVSELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTI 400
PR+PLVDAVAAHDR M+KVSE+V P KSK ++++ LL QIRNK+ NLKP + + P+I
Sbjct: 1302 PRSPLVDAVAAHDRRKMKKVSEMVHPPIKSKQDDKDSLLAQIRNKSVNLKPAVTTR-PSI 1360
Query: 401 RTPPRASTRNLKVAAIIEKANAIRQAVG 428
+T PR +L+VAAI+EKAN IR A+
Sbjct: 1361 QTGPRT---DLRVAAILEKANTIRMAMA 1385
>AT5G01730.1 | chr5:273019-277561 REVERSE LENGTH=1171
Length = 1170
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 6/94 (6%)
Query: 349 VAAHDRSTMRKVSELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTIRTP-PRAS 407
V DRS +RKVSE ++ +E + LLE IR+K+FNL+P ++ +P + P+
Sbjct: 1080 VIGIDRSMLRKVSEGNRTHVGARVDENDSLLEIIRSKSFNLRPADASGRPNFQVAVPKT- 1138
Query: 408 TRNLKVAAIIEKANAIRQAV-GSDDE-DGDNWSE 439
NLKVAAI+EKAN +RQA+ GSDDE D D+WSE
Sbjct: 1139 --NLKVAAILEKANTLRQAMAGSDDEHDSDSWSE 1170
>AT2G34150.2 | chr2:14419432-14423259 REVERSE LENGTH=822
Length = 821
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 378 LLEQIRNKTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIEKANAIRQAVGSDDEDG--D 435
L QIR K FNL+ V K T +T N ++ I+EKAN+IRQAV SDD +G D
Sbjct: 760 FLHQIRTKQFNLRRVVRTK-----TSSSETTMNTNISVILEKANSIRQAVASDDGEGESD 814
Query: 436 NWSES 440
WS+S
Sbjct: 815 TWSDS 819
>AT1G29170.1 | chr1:10190352-10194900 REVERSE LENGTH=1021
Length = 1020
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 22/101 (21%)
Query: 349 VAAHDRSTMRKVSELVAPTDKSKPNERNLLLEQIRNKTFNLKPV--------SSAKQPTI 400
+ AH ++ +R+ + + +K E L+QIR + FNL+PV ++ P I
Sbjct: 933 IKAHLKNNVREEKQ----SANAKETETGDFLQQIRTQQFNLRPVVMTTTSSATATTDPII 988
Query: 401 RTPPRASTRNLKVAAIIEKANAIRQAVGSDDED-GDNWSES 440
N K++AI+EKAN+IRQAV S D D D WS++
Sbjct: 989 ---------NTKISAILEKANSIRQAVASKDGDESDTWSDT 1020
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.126 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,672,101
Number of extensions: 479206
Number of successful extensions: 1210
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1204
Number of HSP's successfully gapped: 4
Length of query: 443
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 341
Effective length of database: 8,310,137
Effective search space: 2833756717
Effective search space used: 2833756717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)