BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0816700 Os03g0816700|AK107781
(236 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G01750.2 | chr5:290034-291109 FORWARD LENGTH=218 100 9e-22
AT3G11740.1 | chr3:3712427-3713389 FORWARD LENGTH=195 94 5e-20
AT2G14560.1 | chr2:6214150-6215170 FORWARD LENGTH=208 87 1e-17
AT1G33840.1 | chr1:12283862-12285306 REVERSE LENGTH=231 85 3e-17
AT3G16900.1 | chr3:5772106-5772849 FORWARD LENGTH=186 70 9e-13
AT3G10986.1 | chr3:3444203-3445672 REVERSE LENGTH=198 70 9e-13
AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221 65 4e-11
AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211 60 7e-10
AT3G56180.1 | chr3:20844765-20845548 FORWARD LENGTH=205 60 1e-09
>AT5G01750.2 | chr5:290034-291109 FORWARD LENGTH=218
Length = 217
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 53 RVIGTTERDFAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHA 112
+++ T+ +F +TD G ++ +++ VF L + +LLD + PV+T+ + M W
Sbjct: 45 KMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQV 104
Query: 113 FRGDSTSRRSVLFSVVKESVVQVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGN 172
FRG ST +R +L++V + S++Q++TK+ V+LG + + DF + G++ +C V+AG
Sbjct: 105 FRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRC-DFRVKGSWLERSCVVYAGE 163
Query: 173 XXXXXXXXIAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMH 225
+AQ+ R + + V L + ++ + P +D AFI SLVVIL +++
Sbjct: 164 ----SDAIVAQMHRKHTVQS-VFLGKDNFSVTVYPNVDYAFIASLVVILDDVN 211
>AT3G11740.1 | chr3:3712427-3713389 FORWARD LENGTH=195
Length = 194
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 106/174 (60%), Gaps = 7/174 (4%)
Query: 53 RVIGTTERDFAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHA 112
+V+ T+ +FAVTD G ++ +++ +FS+ + +LLDA P+LT+ ++ + W
Sbjct: 21 KVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDTPILTLRENKVSLHDRWLV 80
Query: 113 FRGDSTSRRSVLFSVVKESVVQV-RTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAG 171
+RG ST + +L+++ + S++Q+ + K+ ++L + ++ DF + G++ +C V+AG
Sbjct: 81 YRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEM-KICDFHVKGSWIDRSCVVYAG 139
Query: 172 NXXXXXXXXIAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMH 225
+AQ+ + + A +++ + +S ++ + P +D AFI+SL+VIL +++
Sbjct: 140 K----SDAIVAQMHKKHTAQSIL-IGKSNFSVTVYPNVDFAFIVSLIVILDDIN 188
>AT2G14560.1 | chr2:6214150-6215170 FORWARD LENGTH=208
Length = 207
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 53 RVIGTTERDFAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHA 112
+V+ T+ +F +T A G ++ +++ +FSL + +LLD + VLT+ M W
Sbjct: 25 KVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGAKVLTLRGKMMTMHDRWQV 84
Query: 113 FRGDSTSRRSVLFSVVKESVVQVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGN 172
FRG ST ++L++V + S++Q+ K+ V+L +++ DF + G + +C V+AG+
Sbjct: 85 FRGGSTEEGALLYTVKRSSMIQLAPKLEVFLAN-NVEEKICDFKVKGAWLDDSCVVYAGD 143
Query: 173 XXXXXXXXIAQIT-RPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMH 225
IA + + + G G + ++ ++ +D AFI SL+VIL E+
Sbjct: 144 ----SDTIIAHMCGKQTMRGFFFG--KDHFSVTVDKNVDYAFIASLIVILVEIE 191
>AT1G33840.1 | chr1:12283862-12285306 REVERSE LENGTH=231
Length = 230
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 53 RVIGTTERDFAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHA 112
+V+ T+ +F +T+A G ++ +++ FSL ++ +L+D VLT+ M W
Sbjct: 45 KVLKITDGNFVITNAEGNLLFKVKDPFFSLHEKRILMDGFGTKVLTLKGKIMTMHDRWLV 104
Query: 113 FRGDSTSRRSVLFSVVKESVVQVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGN 172
FRG ST +L++V + ++VQ+ TK+ V+L + D+ + G + +C V+AG+
Sbjct: 105 FRGGSTEEVDLLYTVKRSNMVQITTKLDVFLADNIEQKKC-DYRLEGVWLETSCFVYAGD 163
Query: 173 XXXXXXXXIAQI-TRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVIL 221
+AQ+ + + L G + + +NP +D AFI SL+VIL
Sbjct: 164 ----SDIILAQMREKKTMQSVLFG--KDNFCLTVNPNVDYAFIASLIVIL 207
>AT3G16900.1 | chr3:5772106-5772849 FORWARD LENGTH=186
Length = 185
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 16/158 (10%)
Query: 64 VTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHAFRGDSTSRRSV 123
V DA G V +++ +F L + +L+D P++TM W +RG +
Sbjct: 35 VKDATGNKVFKVKTPLFGLHNKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGSDLDDK-- 92
Query: 124 LFSVVKESVVQVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGNXXXXXXXXIAQ 183
+F+V + S VQ++T++ V+L ++ + DF I G + ACT++ + IAQ
Sbjct: 93 IFTVKRSSTVQLKTRVEVFLKHNQTRESSCDFTIKGRFMKRACTIYVAD----STKIIAQ 148
Query: 184 ITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVIL 221
+ G R V A I P +D AFI++L+ I
Sbjct: 149 VYE--------GHERLV--ATIYPNVDYAFIVTLIFIF 176
>AT3G10986.1 | chr3:3444203-3445672 REVERSE LENGTH=198
Length = 197
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 10/171 (5%)
Query: 62 FAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTM-TDSTYLMSSMWHAFRGDSTSR 120
+ V D + ++ ++G ++++R++ +L DAA P+L+M T M W ++GDST
Sbjct: 31 YDVFDLSNNLIFTVDGGIWNIRRKRVLRDAAGIPLLSMRTKGLVPMRYNWEVYKGDSTES 90
Query: 121 RSVLFSVVKESVVQVRTKIFVYLGGYRSADQV----PDFVIGGNYYGGACTVFAGNXXXX 176
++LFS + +++ +T + V L +S+ + PDF G Y G + +F
Sbjct: 91 DNLLFSAREPNLLSFKTSLDVTLPPDQSSTDISSVEPDFQTFGRYIGSSFKLFE----PI 146
Query: 177 XXXXIAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMHHC 227
+A++ G L+ + S + R+NP +D AF+++L+VI + +
Sbjct: 147 HNTLLAEVVHDFTWGGLIKGSYS-FKVRVNPYVDFAFVVALLVITDDTSNL 196
>AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221
Length = 220
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 62 FAVTDAAGAVVMRLE--GAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHAFRGDSTS 119
FA D G ++ R++ G +L+DA + +LT+ + W F G+ +
Sbjct: 47 FAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLLTVKRKRPTLHQRWEGFLGERSE 106
Query: 120 RRSVLFSVVKESVV-QVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGNXXXXXX 178
+ +FSV + S++ + ++ VY G +++I G++ +C ++
Sbjct: 107 GQKPIFSVRRSSIIGRCTMEVEVYDGTGE------EYIIDGDFSQRSCLIYD-----TKK 155
Query: 179 XXIAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMH 225
+A+I R A T V L R V+T I PG D AF + LVV+L +++
Sbjct: 156 CTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQIN 202
>AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211
Length = 210
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 62 FAVTDAAGAVVMRLE---GAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHAFRGDST 118
F V D G++V R++ G +L+DA R +LT+ + W + G+ +
Sbjct: 33 FTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRCLLTLRRKRPSLRRRWEGYLGERS 92
Query: 119 SRRSVLFSVVKESVVQVRTKIFVYLGGYRSADQVPDFVIGGNYYGGACTVFAGNXXXXXX 178
+ +F V + S++ + G Y Q +++I G++ CTV
Sbjct: 93 DGQKPIFGVRRSSIIGRNSVTVEVYGDY----QCSEYLIEGSFGARNCTVVEAE----TR 144
Query: 179 XXIAQITRPNLAGTLVGLTRSVYTARINPGIDQAFILSLVVILHEMH 225
+A+I R A T V L + V++ + PG D AF + LV++L +++
Sbjct: 145 RKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLVLDQIY 191
>AT3G56180.1 | chr3:20844765-20845548 FORWARD LENGTH=205
Length = 204
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 25/174 (14%)
Query: 62 FAVTDAAGAVVMRLEGAVFSLRKRTLLLDAARRPVLTMTDSTYLMSSMWHAFRGDSTSRR 121
+ V D +G ++++++G + ++ ++ D A +L+M + + W G+S R
Sbjct: 45 YEVFDPSGNLLLQIDGQAWGFNRKRVMRDPAGFTILSMRQKGLALKNKWEVHGGESKERE 104
Query: 122 SVLFSVVKESVVQVRTKIFVYLGGYRSADQVP--DFVIGGNYYGGACTVFAGNXXXXXXX 179
+LF+V + V ++T + V+L + + DF G Y + VF +
Sbjct: 105 DLLFTVQQSQAVSLKTSVDVFLPENNNVKKTNTCDFHASGGYSNISFKVFKADAL----- 159
Query: 180 XIAQITRPNLAGTLVGLT-------RSVYTARINPGIDQAFILSLVVILHEMHH 226
+AG VG T + + R+NP +D AFI++L+V++ + +
Sbjct: 160 ---------IAG--VGFTWGSFCKGKYNFKVRVNPEVDYAFIIALLVMVDDNEN 202
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,799,778
Number of extensions: 119672
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 9
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)