BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0815700 Os03g0815700|AK065405
(281 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287 383 e-107
AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284 367 e-102
AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309 266 6e-72
AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316 263 9e-71
AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299 258 2e-69
AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805 104 6e-23
>AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287
Length = 286
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/286 (69%), Positives = 222/286 (77%), Gaps = 7/286 (2%)
Query: 1 MSGLY--SPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQE 58
MSGLY S FSPAR SPQIRS P SQYL ELLAEHQKL PFMQVLPICS+LL+QE
Sbjct: 1 MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60
Query: 59 IMRVSSIVHNHGFGDFDRHXXXXXXXXXXXXXXXXXXGNGFSPWNGLHQERLGFPQGTSM 118
+ RVS ++ N GFGDFDR G WNGL QERL G +M
Sbjct: 61 MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPGMTM 120
Query: 119 DWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGK 178
DWQGAP SPSS+ VK+ILRL++PVD+YPNFNFVGR+LGPRGNSLKRVEA+TGCRVFIRGK
Sbjct: 121 DWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGK 180
Query: 179 GSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQ 238
GSIKDP KEDKLRG+PGYEHL++ LHILIEA+ PASI++ RLR AQE+IEELLKPVDESQ
Sbjct: 181 GSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQ 240
Query: 239 DFYKRQQLRELAMLNS-TLREDSPHP---GSVSPFSNGGMKRAKTG 280
DF KRQQLRELA+LNS LRE+SP P GSVSPF++ G KR KTG
Sbjct: 241 DFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285
>AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284
Length = 283
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/283 (66%), Positives = 227/283 (80%), Gaps = 2/283 (0%)
Query: 1 MSGLYS-PGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEI 59
MSGLY+ FSP+R SPQIR+ +DVDSQY+++LLAEHQKLGPFMQVLPICS+LL+QEI
Sbjct: 1 MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60
Query: 60 MRVSSIVHNHGFGDFDRHXXXXXXXXXXXXXXXXXXGNGFSPWNGLHQERLGFPQGTSMD 119
R++ ++ N GF DFDR G G WNGL ER+G P G +M+
Sbjct: 61 FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMAME 120
Query: 120 WQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKG 179
WQGAP SPSS+ VK+ILRLD+PVD+YPNFNFVGR+LGPRGNSLKRVEA+TGCRV+IRGKG
Sbjct: 121 WQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 180
Query: 180 SIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQD 239
SIKDP KE+KL+GKPGYEHL++ LHILIEA+ P I+D +LR AQE+IEEL+KPVDESQD
Sbjct: 181 SIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQD 240
Query: 240 FYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281
+ KRQQLRELA+LNS LRE+SP P GSVSPF++ MKR KTG+
Sbjct: 241 YIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283
>AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309
Length = 308
Score = 266 bits (681), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 138/269 (51%), Positives = 182/269 (67%), Gaps = 8/269 (2%)
Query: 14 NLSPQIRSNPTDVDSQ--YLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSIVHNHGF 71
N S +RS P+ + Q YL+ELLAE KL PF+ VLP +L++QEI+RV++++ N
Sbjct: 43 NFSGGLRSQPSFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENALS 102
Query: 72 GDFDRHXXXXXXXXXXXXXXXXXXGNGFSPWNGLHQERLGFPQGTSMDWQGAPPSPSSHV 131
H G W + +W +P S S +
Sbjct: 103 QSRFDHPSPLASGGIFQNSRADMNG-----WASQFPSERSVSSSPAPNWLNSPGSSSGLI 157
Query: 132 VKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLR 191
VK+ +R+D+PVD YPN+NFVGR+LGPRGNSLKRVEAST CRV IRG+GSIKDP KED +R
Sbjct: 158 VKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMR 217
Query: 192 GKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAM 251
GKPGYEHL++PLHIL+EAE P I+DARL A+E++++LL PV+E+ DFYK+QQLRELA+
Sbjct: 218 GKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELAL 277
Query: 252 LNSTLRED-SPHPGSVSPFSNGGMKRAKT 279
LN +LRE+ SP GS+SP+++ GMKRAKT
Sbjct: 278 LNGSLREEGSPMSGSISPYNSLGMKRAKT 306
>AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316
Length = 315
Score = 263 bits (671), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 133/252 (52%), Positives = 173/252 (68%), Gaps = 4/252 (1%)
Query: 29 QYLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSIVHNHGFGDFDRHXXXXXXXXXXX 88
+YL+ELLAE KL PF+ VLP +LL+QEI+RV++++ N
Sbjct: 64 KYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDHPSPLASGGI 123
Query: 89 XXXXXXXGNGFSPWNGLHQERLGFPQGTSMDWQGAPPSPSSHVVKKILRLDVPVDSYPNF 148
NG W P +W +P S S + K+ +R+D+PVD+YPNF
Sbjct: 124 FQNARADMNG---WASQFPSERSVPSSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNF 180
Query: 149 NFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDPLHILIE 208
NFVGR+LGPRGNSLKRVEAST CRV IRG+GSIKDP KE+ +RGKPGYEHL++PLHIL+E
Sbjct: 181 NFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVE 240
Query: 209 AEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTLRED-SPHPGSVS 267
AE P I+DARL A+E++++LL P++E+ D YK+QQLRELA+LN TLRE+ SP GSVS
Sbjct: 241 AELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSVS 300
Query: 268 PFSNGGMKRAKT 279
P+++ GMKRAKT
Sbjct: 301 PYNSLGMKRAKT 312
>AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299
Length = 298
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/283 (52%), Positives = 185/283 (65%), Gaps = 24/283 (8%)
Query: 8 GFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSIVH 67
GF + N SP P+D + +YL ELL E QKLGPF+QV+P C +LL+ EI RVSS
Sbjct: 27 GFRASPNRSP---CPPSDRE-RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS--- 79
Query: 68 NHGFGDFDRHXXXXXXXXXXXXXXXXXXGNGFSPWNG---LHQERLGFPQGTS-MDWQGA 123
F D DR+ G+S H +R +G S + W G
Sbjct: 80 ---FPDLDRYEHGSPFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGM 136
Query: 124 PPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKD 183
P P+ +VKK++RLDVPVD YP++NFVGRILGPRGNSLKRVE +T CRVFIRG+GS+KD
Sbjct: 137 PGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKD 196
Query: 184 PGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKR 243
KE+KL+GKPGYEHL +PLH+LIEAE P II++RL HA +E LLKP+DES D YKR
Sbjct: 197 TVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKR 256
Query: 244 QQLRELAMLNSTLREDSPHPG-------SVSPFSNGGMKRAKT 279
+QL+ELA LN TLRE+SP P S+SPF++ KRAKT
Sbjct: 257 EQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAKT 296
>AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805
Length = 804
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 82/123 (66%), Gaps = 6/123 (4%)
Query: 137 RLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGY 196
+L +P+ +P +NF+G I+GPRGN+ KR+E TG ++ IRGKGS+K+ G+ + +
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE-GRHQQKKDLKYD 302
Query: 197 EHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTL 256
++ LH+L+EAE L A ++E+LL+PVDE + +KRQQLRELA LN T+
Sbjct: 303 PSENEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGTI 357
Query: 257 RED 259
R++
Sbjct: 358 RDE 360
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,366,288
Number of extensions: 266915
Number of successful extensions: 666
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 7
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)