BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0809200 Os03g0809200|AK102250
         (98 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36730.1  | chr4:17309850-17311752 REVERSE LENGTH=316           54   2e-08
AT2G35530.1  | chr2:14923280-14926025 REVERSE LENGTH=410           47   2e-06

>AT4G36730.1 | chr4:17309850-17311752 REVERSE LENGTH=316
          Length = 315

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 44/75 (58%)

Query: 11  LHCQQECEELSQKVTELTAVNSTLMTELDKLKKDCEDMEAENSQLMDEMVQSEGSSVIAT 70
           L  Q ECE+L Q+V  L+  N +L  EL +L  +C+ +++EN+ + DE+ +  G+  +A 
Sbjct: 241 LRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQRVLGAEAVAN 300

Query: 71  LSVKIDTSKDRHGSS 85
           L      SKD  G++
Sbjct: 301 LEQNAAGSKDGEGTN 315



>AT2G35530.1 | chr2:14923280-14926025 REVERSE LENGTH=410
          Length = 409

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 11  LHCQQECEELSQKVTELTAVNSTLMTELDKLKKDCEDMEAENSQLMDEM 59
           L  Q EC+EL+Q+   L   N+ L  E++KLK  CE++  EN+ L D++
Sbjct: 324 LRKQAECDELAQRAEVLNEENTNLRAEINKLKSQCEELTTENTSLKDQL 372



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.122    0.324 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,841,788
Number of extensions: 56946
Number of successful extensions: 486
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 2
Length of query: 98
Length of database: 11,106,569
Length adjustment: 68
Effective length of query: 30
Effective length of database: 9,242,281
Effective search space: 277268430
Effective search space used: 277268430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 104 (44.7 bits)