BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0808500 Os03g0808500|Os03g0808500
(124 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44265.1 | chr5:17832779-17833316 REVERSE LENGTH=127 55 7e-09
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 54 2e-08
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 52 7e-08
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 52 1e-07
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 52 1e-07
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 49 8e-07
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 47 2e-06
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 46 4e-06
>AT5G44265.1 | chr5:17832779-17833316 REVERSE LENGTH=127
Length = 126
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 43 LAPCGPFLLGGAARPGDRCCGGARALRGMA-GTAEARRALCRCLEQSGPSFG--VLPDRA 99
+ C FL G +PG +CC L +A E R LC C+E + +L D+
Sbjct: 43 FSYCLDFLTGYYYKPGKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTRGYTPPMLADKI 102
Query: 100 RRLPALCKLGLAIPVGAATDCSKI 123
++LP LC L+ P+ ++ DCS +
Sbjct: 103 QQLPLLCNTHLSFPISSSMDCSTV 126
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 43 LAPCGPFLLGGAARPGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSF-GVLPDRARR 101
LAPC +L G P CC G + L MA T R+ CRC++ + S G+ P A
Sbjct: 34 LAPCATYLSKGGLVP-PSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASG 92
Query: 102 LPALCKLGLAIPVGAATDCSKI 123
LP C + + P+ +T+C+ I
Sbjct: 93 LPGKCGVSIPYPISMSTNCNNI 114
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 43 LAPCGPFLLGGAARPGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSFGVLPDRARRL 102
L PC +L G+ P + CC G ++L T+ ++A C+C++ S V P+ A+ L
Sbjct: 35 LQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVTVKPELAQAL 94
Query: 103 PALCKLGLAIPVGAATDCSKI 123
+ C L + DC+ +
Sbjct: 95 ASNCGASLPVDASPTVDCTTV 115
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 43 LAPCGPFLLGGAARPGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSFGVLPDRARRL 102
L+PC +L G P CC G + L GMA T R+ CRCL+ + GV P A L
Sbjct: 34 LSPCLGYLSKGGVVP-PPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK--GVNPSLASGL 90
Query: 103 PALCKLGLAIPVGAATDCSKI 123
P C + + P+ +T+C+ I
Sbjct: 91 PGKCGVSIPYPISTSTNCATI 111
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 43 LAPCGPFLLGGAARPGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSF-GVLPDRARR 101
LA C P+L G P CC G +L+ A R+ C CL+ + G+ D A++
Sbjct: 38 LAQCLPYLKAGG-NPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQ 96
Query: 102 LPALCKLGLAIPVGAATDCSKIS 124
LPA C + + +P DC+ I+
Sbjct: 97 LPAKCGVNIGVPFSKTVDCNSIN 119
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 43 LAPCGPFLLGGAARPGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSF-GVLPDRARR 101
LA C +L P +CC G ++L +A T R+ +C CL+ +G G+ D
Sbjct: 35 LAQCLTYLTNSGPLPS-QCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAA 93
Query: 102 LPALCKLGLAIPVGAATDCSKIS 124
LP C + + P+ +T+C IS
Sbjct: 94 LPTTCGVSIPYPISFSTNCDSIS 116
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 43 LAPCGPFLL-GGAARPGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSF--GVLPDRA 99
L PC +L GG PG +CC G R L GM T RR CRC++ + + G+ DRA
Sbjct: 36 LKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRA 95
Query: 100 RRLPALCKLGLAIP 113
+P C G+ IP
Sbjct: 96 AGIPRRC--GIKIP 107
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 43 LAPCGPFLLGGAARPGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSF--GVLPDRAR 100
LA C +L GA CC G L+ MA T R+ CRCL+ + + G+ RA
Sbjct: 36 LAGCIAYLTRGAPLT-QGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAA 94
Query: 101 RLPALCKLGLAIPVGAATDCSKI 123
LP+ CK+ + + A+T+C+ +
Sbjct: 95 GLPSACKVNIPYKISASTNCNTV 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.142 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,847,463
Number of extensions: 59731
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 9
Length of query: 124
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 38
Effective length of database: 8,748,793
Effective search space: 332454134
Effective search space used: 332454134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)